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Detailed information on CNT30445498


BLAST search results

BLAST vs Swiss-Prot:
sp|Q42430|ZFP1_WHEAT, E-value = 2e-38

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30603952Saccharum spontaneumOryza punctata31.2717.1686.1187forward

Expression of CNT30445498

Peptides detected in this lncRNA

>peptide 1 (53 aa)
QDVGGRGAAADASVVVLPLVPAERLACGELLVADGAPVDSARRRRPVGGRGGG*

>peptide 2 (57 aa)
MRRQSARFSSSDRWRRERFFAGRRGDEFLAATCSRGGCLGALLSLWGGVRVSEESEGV

>peptide 3 (69 aa)
PGRRWTRRCCRRLRRSASSCARRAPGLWGTPCGRWSTCGLCSTPPPRRRTRRWMTWPAHGRRPRLAGAG*

>peptide 4 (69 aa)
MEHLWTLLDAAAPSEDAAVDDVAGSRTTTSTGGGGMTTSTRGTAAGTTAAAGGVGSLTRWLVLWPPSAW*

Sequence

>CNT30445498
CCAGGACGTCGGTGGACGCGGCGCTGCTGCCGACGCCTCCGTCGTAGTGCTTCCTCTTGTGCCCGCCGAGCGCCTGGCCTGTGGGGAACTCCTTGTGGCA
GATGGAGCACCTGTGGACTCTGCTCGACGCCGCCGCCCCGTCGGAGGACGCGGCGGTGGATGACGTGGCCGGCTCACGGACGACGACCTCGACTGGCGGG
GGCGGGATGACGACCTCCACGAGGGGCACTGCTGCCGGGACGACAGCAGCAGCAGGAGGGGTCGGCAGCTTGACCCGGTGGCTGGTCTTGTGGCCCCCCA
GCGCCTGGTAGGAGCTGAAGGACTTGCCGCAGACGGAGCACCTGAACTCCGCGGCGACCGGCGCCGCGGACGGGACCAGCGGCGGCGCCGCCTGGACGCG
GTGGTTGCCACCGCGGGAGAGCATGAGGAGGCAGAGCGCGAGGTTCTCCTCCTCCGACCGCTGGCGCCGCGAGCGCTTCTTCGCTGGGAGACGTGGAGAC
GAGTTCTTGGCTGCGACTTGTTCTCGCGGTGGTTGCTTGGGCGCCTTGCTCTCGCTGTGGGGTGGTGTGCGTGTGAGTGAGGAGAGTGAGGGTGTGAG