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Detailed information on CNT30444735


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONZMAT000139, E-value = 2e-92

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692288Saccharum spontaneumOryza sativa40.9847.3795.73234forward
CNT30522081Saccharum spontaneumSetaria italica40.9840.4196.58234forward
CNT30180108Saccharum spontaneumSecale cereale3899.0991.71217forward
CNT30221546Saccharum spontaneumHordeum vulgare36.9592.5492.89211forward
CNT30439818Saccharum spontaneumAegilops tauschii36.9570.5791.47211forward
CNT30249006Saccharum spontaneumAvena sativa41.1627.0192.34235forward
CNT30658643Saccharum spontaneumTriticum dicoccoides37.8348.7692.59216forward
CNT30680880Saccharum spontaneumTriticum urartu37.8341.7892.59216forward
CNT30721558Saccharum spontaneumTriticum spelta38.3597.7791.78219forward
CNT30341886Saccharum spontaneumEragrostis tef34.8573.4391.46199forward
CNT30369862Saccharum spontaneumOryza glumipatula36.7895.4595.24210forward
CNT30575680Saccharum spontaneumOryza barthii39.490.3695.56225forward
CNT30116256Saccharum spontaneumOryza nivara39.5899.5695.13226forward
CNT30593977Saccharum spontaneumEragrostis curvula38.799.5592.76221forward

Expression of CNT30444735

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MEGVEVEADVVHHADAAEALAHVAALRPQHRLVLVLRVERHQLH

>peptide 2 (34 aa)
MLFTMRMQRKPLPTSPLSVHSTDSSWYSGLNGTSF

Sequence

>CNT30444735
CAAAACCTTACGTTGATAAAATAAACCCACTTGGATAAAAAGGAAGGATCCGAGTACAGTACAGAGTTACACTCCAGGTCTGATTACTCTCTCACACTGC
ATAACAAGCTCAGATGGGGGAATGCTTAGTGAGATAAGCTCACCGAGGAAGGAGTACCCCTCTCACTCTCCTCACACACGGAAGCAGAACACACGATTGA
ACTAAAACACAGACACAGACACACCATCAGTCCATCACCACAAATCGATCGCCACCAACTTTATTCTAGCAACACGGCAGCAGCTGCTGACCACAGGTGG
CTGTGCTCTCCAACTCCAACTCCAGATCCCGACTTGACTTACACCAGGGGACGATCTTCCAGCGCTGGTTGTCGCCCTCGCACCACTTCCAGAGCACGAC
GGCGGTGCCGTCGCGCACCCCGCCGTGGTCCTTGTCGCCATGGAAGGCGTCGAAGTTGAGGCGGATGTTGTTCACCATGCGGATGCAGCGGAAGCCCTTG
CCCACGTCGCCGCTCTCCGTCCACAGCACCGACTCGTCCTGGTACTCCGGGTTGAACGGCACCAGCTTCAC