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Detailed information on CNT30443203


BLAST search results

BLAST vs Swiss-Prot:
sp|Q43217|H2B3_WHEAT, E-value = 1e-56

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674589Aegilops tauschiiSetaria viridis26.2274.1496.51172forward
CNT30702570Aegilops tauschiiQuercus lobata18.924.889.52124forward
CNT30379403Aegilops tauschiiManihot esculenta17.6820.6484.48116forward
CNT30526697Aegilops tauschiiPhaseolus vulgaris28.270.3483.24185forward
CNT30630598Aegilops tauschiiVigna unguiculata39.1846.1481.32257forward
CNT30181099Aegilops tauschiiSecale cereale42.8434.7897.51281forward
CNT30304304Aegilops tauschiiTriticum aestivum42.3855.3898.2278forward
CNT30565715Aegilops tauschiiActinidia chinensis41.0134.2784.76269forward
CNT30586986Aegilops tauschiiMusa acuminata39.0272.3289.45256forward
CNT3086649Aegilops tauschiiVigna radiata39.9435.1282.82262forward
CNT30552027Aegilops tauschiiOryza glaberrima42.6851.9594.29280forward
CNT30171046Aegilops tauschiiTrifolium pratense39.1872.3978.99257forward
CNT30241394Aegilops tauschiiAvena sativa42.6853.3395.36280forward
CNT30666604Aegilops tauschiiTriticum dicoccoides41.7751.9998.54274forward
CNT30130711Aegilops tauschiiLolium perenne42.6841.1895.36280forward
CNT30205622Aegilops tauschiiHelianthus annuus10.2124.8191.0467forward
CNT30684878Aegilops tauschiiTriticum urartu42.6831.0198.21280forward
CNT30722188Aegilops tauschiiTriticum spelta41.7740.1298.54274forward
CNT30363575Aegilops tauschiiSorghum bicolor42.0729.9397.1276forward
CNT30360466Aegilops tauschiiLactuca sativa17.6827.5585.34116forward
CNT30570929Aegilops tauschiiVitis vinifera38.5737.779.84253forward
CNT3052765Aegilops tauschiiAmborella trichopoda18.1423.4387.39119forward
CNT30327286Aegilops tauschiiAsparagus officinalis41.0129.7691.45269forward
CNT30496069Aegilops tauschiiDigitaria exilis42.3834.8493.88278forward
CNT30174435Aegilops tauschiiVigna angularis40.5539.780.83266forward

Expression of CNT30443203

Peptides detected in this lncRNA

>peptide 1 (44 aa)
ISQDNETVCCHTTSRGYTATWSEQLTSSITEYHRTTKKIREQII*

>peptide 2 (29 aa)
MSLMKEFMMDMALEEMPMSGCTCFSTLKM*

Sequence

>CNT30443203
ATTTCACAAGATAATGAAACAGTGTGCTGCCACACAACAAGCAGAGGCTACACAGCGACATGGTCCGAACAGCTAACGAGTAGTATTACAGAGTACCATC
GAACGACCAAGAAGATACGAGAACAGATTATCTAAGAGGAGGTGAACTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCGAGCTCGCCGGG
GAGGACGAGGCGGACGGAGGTCTGGATCTCCCTGGACGTGATGGTGGGCTTCTTGTTGTAGCGGGCCAGCTTGGCGGACTCGCCGGCGAGCTTCTCGAAG
ATGTCGTTGATGAAGGAGTTCATGATGGACATGGCCTTGGAGGAGATGCCGATGTCCGGGTGCACCTGCTTCAGCACCTTGAAGATGTAGATCTTGTACG
TCTCCACGCTCTTCTTGGCCTTCTTCTTCTTCTTGTCGGCGCCGCCCTCCTTGGACTTCGGCGGCCGCTTCTCGGCCTTGGGCTTCTTCCCCGCCGTGGT
CTTCTCCGCCGCAGGGGTCTTCTCCGCGGCCGCCGGCTTCTTCTCCGCCTTGGGGGCCATCGGACGCTGCTGCTTCGCCGGGGAGAGGTGCGGTGGTTCG
CCAGAGGGTGCGAGGGGGCTGGTGGGGAATTGGATTGCTGGTTGGTGATGAGATGG