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Detailed information on CNT30442397


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SK39|SBP3_ARATH, E-value = 4e-39

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691502Aegilops tauschiiOryza sativa8.9823.3697.7589forward
CNT30670851Aegilops tauschiiSetaria viridis12.6162.1990.4125forward
CNT30519964Aegilops tauschiiSetaria italica23.5132.4190.99233forward
CNT30686589Aegilops tauschiiTriticum urartu76.6977.5593.03760forward
CNT30364531Aegilops tauschiiSorghum bicolor18.7758.1390.32186forward
CNT30595654Aegilops tauschiiOryza meridionalis15.9427.0195.57158forward
CNT30369561Aegilops tauschiiOryza glumipatula15.9425.8296.2158forward
CNT30100122Aegilops tauschiiOryza rufipogon15.9427.6796.2158forward

Expression of CNT30442397

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MKMSLCKPAALNLHGRLDIQRAAPYRAMLHLNQALE*

>peptide 2 (37 aa)
PVDCSKSKKQTRHLNQQILTFHRKLLYYRQHTSRLPQ*

Sequence

>CNT30442397
CACCAGTGGACTGCTCTAAATCTAAAAAACAGACAAGACATCTAAACCAGCAAATTCTAACTTTCCACCGGAAACTACTATATTATCGCCAGCATACATC
CAGACTGCCACAATAAAGTGGAGAAAACTTTGGTTTCCCCAAAATACAATGAAAATGAGCCTATGTAAACCCGCAGCACTGAATTTACATGGGAGGCTGG
ACATTCAGCGCGCTGCTCCATACAGAGCCATGCTCCACCTAAATCAAGCCTTAGAATAACAAGTCAAAGCTGAAACAATGTGGAAATTATAAGGATCAAT
CATCAGTTGCTCCATTGATCTTAACAACAGACCACAGCACTATTATTTCAGTTCACCAATTGCCGCCAGCAAACACGCCCTCAGATTATTATTTGACGGT
CATACGCAGGGAGCAACAAGATACAGACACACACGGTGGAGCTGCTGGTCACAGGAGGATACGATAGTAGCTGAGGACGGAAGAGGGGTGCCGGTGGCCG
AATTGACTTCACATCAGGCGGCGAGGCGGGCGACGACGGGGTACTTGGCCTGGAACTTGGACTCCCAGTCGGCGAGCACGCCGAGCTCCTTGTCGGAGAG
GCCGGAGAGGTCGCCGGAGACGTCGGCGGCGTCCTTGGACATCTTGGCGAGCGCGCGGGCGGCCTCGCGGCCGGCGAAGAGCGCGTAGTCGCCGCCGGGC
CCGTAGAAGCCGCGCCCGGCCGAGACGTCGAAGACCTTGCCGCGGATGGCGACGTAGATCGGCTTGGACGCGTCGGTGCCGTCGTACGCCCGCAGCTGCG
CCGCCGTCAGAGCTCCGTCGCCATCTCGATCTCCCTCTGCGCGCTGCGCGTGGTAGGTGTGTTGCGAGTGAGGCTGGGGGTGGGCTGGGGGTGAAGAGCA
GAGGTCTGCGTCGGCCACACGCTGACGGCTGAATTGATTCCTACGGGATGGGATGGGAGTGCCGCTCGGGAGCAGGAGGGGGCAAAGATTG