« Back to Aegilops tauschii search


Detailed information on CNT30441093


BLAST search results

BLAST vs Swiss-Prot:
sp|Q2QVG9|CLPC2_ORYSJ, E-value = 1e-49

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693027Aegilops tauschiiOryza sativa49.4127.8978.88251forward
CNT30298622Aegilops tauschiiTriticum aestivum41.7342.8399.53212forward
CNT30393350Aegilops tauschiiTriticum turgidum45.4723.0899.13231forward
CNT30658759Aegilops tauschiiTriticum dicoccoides43.3137.1679.55220forward
CNT30311914Aegilops tauschiiCamelina sativa48.2339.6479.59245forward
CNT3062430Aegilops tauschiiArabidopsis lyrata49.4121.7779.28251forward
CNT30685178Aegilops tauschiiTriticum urartu31.319.5898.11159forward
CNT30101573Aegilops tauschiiOryza rufipogon49.4129.6378.88251forward
CNT30581271Aegilops tauschiiEchinochloa crusgalli22.6421.786.09115forward

Expression of CNT30441093

Peptides detected in this lncRNA

>peptide 1 (35 aa)
PLKLYMHITVYFIHTVIELYTPDLTAAPMICAGRK*

>peptide 2 (55 aa)
MLNNLLRILYSTNNYTATAGVGSSGSPLSPFSTMTFPSGLSSRSLMMALLSGRAP*

>peptide 3 (50 aa)
MSLVLSLVKTSCSIMSAISLTSSLVSCLKTIISSRRLRNSGRKYCFISSIT

Sequence

>CNT30441093
CCCCTTAAATTATATATGCATATTACTGTGTATTTTATACATACAGTTATAGAATTATATACACCTGACCTGACTGCTGCACCTATGATATGTGCTGGAA
GGAAATGAAAACGCTGTATTGTATATATGCTTAACAATCTTCTACGTATTCTATACAGTACCAACAACTATACAGCGACCGCCGGGGTTGGAAGCTCCGG
CAGTCCGCTCTCGCCATTCAGCACAATGACTTTCCCCTCCGGGCTGTCCTCCAGGAGCCTCATGATGGCCCTCCTCAGCGGCCGCGCTCCGTAGCTAGGG
TTATACCCTTCGTCCACGACCCGCTCCTTGAACTTCTCCGTCACCTGCAGGTTGATGTCCTTGGTCTTGAGCCTGGTGAAAACCTCCTGCAGCATTATGT
CCGCGATCTCTTTGACTTCCAGCTTGGTCAGCTGTCTGAAGACGATCATCTCGTCCAGACGGTTGAGAAACTCCGGTCGGAAGTACTGCTTCATCTCCTC
GATCACCA