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Detailed information on CNT30439826


BLAST search results

BLAST vs Swiss-Prot:
sp|Q42450|RCAB_HORVU, E-value = 2e-31

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30524690Aegilops tauschiiPhaseolus vulgaris21.5413.7687.59137forward
CNT30712287Aegilops tauschiiGlycine max21.548.9189.05137forward

Expression of CNT30439826

Peptides detected in this lncRNA

>peptide 1 (60 aa)
MQQEMVGAYNVEKSLPVTTMGTRGFSSLLYMPGSCTLVGASAMFMRVAFTIWLFTVYCVVP

>peptide 2 (82 aa)
MLKRCKGSCRRHSSPLGRSSWQSGRCILPVQAKYLAVPLYLQFNCFGRSDEKDELDMPEEQVRRIGLHCLFMIHSFVSEVSK*

>peptide 3 (85 aa)
MPSNRLDAMRYLGTKDKTSDIKLACLKGVKAAAVVTPRRWVEVLGSLVGASCRYRQSTLLCPFTCNLIVLDDLMRKMSLICQKNR*

Sequence

>CNT30439826
GATAAGTAGTCCTATTTGTCTTTACCAAATAGGTATACTCAATATCTTTATATATTAACAAAACATGCCCAGCAATCGCTTGGATGCGATGCGGTACTTA
GGTACAAAGGATAAAACATCAGATATTAAATTGGCATGCTTAAAAGGTGTAAAGGCAGCTGCCGTCGTCACTCCTCGCCGTTGGGTCGAAGTTCTTGGCA
GTCTGGTCGGTGCATCCTGCCGGTACAGGCAAAGTACCTTGCTGTGCCCCTTTACCTGCAATTTAATTGTTTTGGACGATCTGATGAGAAAGATGAGCTT
GATATGCCAGAAGAACAGGTAAGAAGAATAGGCCTCCACTGTTTGTTTATGATTCACTCTTTTGTTTCAGAAGTAAGCAAGTGAGAAGTAAGTATGTATG
TAAAGTAGGTGCTGAAAGTATAAAAGGATTGTGCGTAGTTCACCTCCTCCTATGCAGCAAGAGATGGTGGGGGCGTACAACGTCGAGAAATCGTTACCAG
TGACGACGATGGGCACACGTGGGTTCTCCTCCTTGTTGTACATGCCTGGGAGCTGCACATTGGTGGGGGCATCGGCGATGTTCATGAGGGTGGCGTTCAC
CATCTGGTTGTTCACCGTGTACTGCGTCGTCCCGCC