Detailed information on CNT3043981


BLAST search results

BLAST vs Swiss-Prot:
sp|P29402|CALX1_ARATH, E-value = 9e-34

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676740Prunus dulcisSetaria viridis21.8824.2184.4277forward
CNT30517614Prunus dulcisJuglans regia41.7627.9580.95147forward
CNT30278532Prunus dulcisChenopodium quinoa21.596.9285.5376forward
CNT30628962Prunus dulcisVigna unguiculata41.7635.0882.31147forward
CNT30561418Prunus dulcisActinidia chinensis59.3820.7383.73209forward
CNT30144554Prunus dulcisMedicago truncatula27.2711.2185.4296forward
CNT30259695Prunus dulcisBrassica rapa21.8810.1685.7177forward
CNT30605054Prunus dulcisGossypium raimondii59.3836.8682.78209forward
CNT30126269Prunus dulcisCorymbia citriodora47.4444.0680.84167forward
CNT30365925Prunus dulcisSorghum bicolor21.888.6784.4277forward
CNT30120413Prunus dulcisCitrus clementina42.6118.5488150forward
CNT3038556Prunus dulcisCucumis melo29.2613.0484.47103forward
CNT3048947Prunus dulcisCucumis sativus49.4312.381.61174forward

Expression of CNT3043981

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MLSNNIPSCIVQISMPTAATGSKSGWSASK*

>peptide 2 (42 aa)
GSWRGTLLNPEHLPHPFVSLSQLQILVSRWFPGMFLQLSHLL*

Sequence

>CNT3043981
CTGGAAGCTGGAGAGGAACCCTTCTGAACCCTGAACATCTTCCTCATCCTTTTGTTTCTCTTTCTCAACTTCAAATTTTGGTTTCCAGGTGGTTTCCCGG
TATGTTTCTGCAACTTTCTCATCTTTTGTGATCAAAATGTTGTCGAACAATATACCATCTTGCATTGTCCAAATCTCAATGCCAACAGCAGCTACAGGCT
CAAAGTCTGGTTGGTCAGCTTCAAAGTAACTGGGGTTTGGAATCTCCTGAGGCTTCTCAAGCTCCTTCACTATTGCGTACTTCTTAGCCTTCTCACTCAC
AAGAAGGCCATAATCCTCATGTCCCTCACTCTTTGAATGAGTCCACAGACCT