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Detailed information on CNT30439567


BLAST search results

BLAST vs Swiss-Prot:
sp|P85086|RCA_ARAHY, E-value = 2e-15

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30296535Aegilops tauschiiTriticum aestivum40.3951.3897.61502forward
CNT3068390Aegilops tauschiiLeersia perrieri10.7825.3382.84134forward
CNT30684251Aegilops tauschiiTriticum urartu42.8852.3698.5533forward

Expression of CNT30439567

Peptides detected in this lncRNA

>peptide 1 (85 aa)
MPSNRLDAMRYLGTKDKTSDIKLACLKGVKAAAVVTPRRWVEVLGSLVGASCRYRQSTLLCPFTCNLIVLDDLMRKMSLICQKNR*

>peptide 2 (82 aa)
MLKRCKGSCRRHSSPLGRSSWQSGRCILPVQAKYLAVPLYLQFNCFGRSDEKDELDMPEEQVRRIGLHCLFMIHSFVSEVSK*

>peptide 3 (73 aa)
MGTRGFSSLLYMPGSCTLVGASAMFMRVAFTIWLLTVYCVRQHILPFLIMSAASRYRCLMSLAGSPALPLSSSP

>peptide 4 (49 aa)
MCPYSSSFSTVIFGCSKVTHLRTSSSYTRARRAPKKSVGSTILCQYYIT*

>peptide 5 (38 aa)
MDCPGKVSTILTTDSSLTLSVWKIPLQTPIRSSRVGAQ*

>peptide 6 (48 aa)
MENVLTVEGTSLHRILVSITQSCLAHVGVSKLHTLDIVLLLDEHVPVL*

Sequence

>CNT30439567
GAAGGAATGAATACTGAGAGTGACAAATGATAAGTAGTCCTATTTGTCTTTACCAAATAGGTATACTCAATATCTTTATATATTAACAAAACATGCCCAG
CAATCGCTTGGATGCGATGCGGTACTTAGGTACAAAGGATAAAACATCAGATATTAAATTGGCATGCTTAAAAGGTGTAAAGGCAGCTGCCGTCGTCACT
CCTCGCCGTTGGGTCGAAGTTCTTGGCAGTCTGGTCGGTGCATCCTGCCGGTACAGGCAAAGTACCTTGCTGTGCCCCTTTACCTGCAATTTAATTGTTT
TGGACGATCTGATGAGAAAGATGAGCTTGATATGCCAGAAGAACAGGTAAGAAGAATAGGCCTCCACTGTTTGTTTATGATTCACTCTTTTGTTTCAGAA
GTAAGCAAGTGAGAAGTAAGTATGTATGTAAAGTAGGTGCTGAAAGTATAAAAGGATTGTGCGTAGTTCACCTCCTCCTATGCAGCAAGAGATGGTGGGT
GTGTATGGAGAATGTTCTAACCGTAGAAGGTACCAGTCTTCATCGCATCCTGGTTAGCATCACCCAGAGCTGCCTGGCTCATGTAGGTGTCAGCAAGCTG
CACACGCTTGACATTGTCCTGCTCCTGGACGAGCATGTGCCCGTACTCTAGCAGCTTCTCCACTGTCATCTTTGGCTGCTCAAAGGTCACCCACTTGCGC
ACCTCGTCGTCGTACACCCGAGCACGCAGAGCACCGAAAAAGTCTGTAGGATCGACGATCCTTTGTCAATACTATATAACTTGATTGCCCTGATGAATAT
TATCTCTGCAGTGCAGTTGTGAGGAACATACCGATGGATTGTCCTGGGAAGGTGTCGACGATCTTGACGACGGACTCGTCGCTGACATTGTCGGTCTGGA
AGATACCCTTGCAGACACCGATACGGTCGTCGCGGGTGGGAGCCCAGTAGAACTTCTCCATACGACCATCACGGATCAGAGGGGCGTACAACGTCGAGAA
ATCGTTACCAGTGACGACGATGGGCACACGTGGGTTCTCCTCCTTGTTGTACATGCCTGGGAGCTGCACATTGGTGGGGGCATCGGCGATGTTCATGAGG
GTGGCGTTCACCATCTGGTTGTTGACGGTGTACTGTGTGAGGCAGCACATCTTACCCTTCTTGATCATGTCTGCAGCCTCACGGTACCGCTGCCTGATGA
GCTTGGCTGGCTCTCCGGCGTTGCCACTCTCCAGCTCTCCGGC