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Detailed information on CNT30437233


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696585Aegilops tauschiiOryza sativa24.8762.2581.38188forward
CNT30522452Aegilops tauschiiSetaria italica26.8530.1281.28203forward
CNT30179972Aegilops tauschiiSecale cereale58.3360.2589.57441forward
CNT30309159Aegilops tauschiiTriticum aestivum49.665.6789.87375forward
CNT30220948Aegilops tauschiiHordeum vulgare47.8842.6489.5362forward
CNT30252009Aegilops tauschiiAvena sativa54.2341.3382.68410forward
CNT30659789Aegilops tauschiiTriticum dicoccoides54.3741.5689.78411forward
CNT30369770Aegilops tauschiiOryza glumipatula11.5126.0585.0687reverse complement
CNT30109237Aegilops tauschiiOryza longistaminata17.9937.3688.97136reverse complement
CNT30149781Aegilops tauschiiBrachypodium distachyon11.3821.9989.5386forward
CNT30103605Aegilops tauschiiOryza rufipogon24.4727.3780185forward
CNT30577809Aegilops tauschiiOryza barthii26.4623.9282200forward
CNT30551656Aegilops tauschiiOryza brachyantha24.4721.6983.24185forward

Expression of CNT30437233

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MMCFLIGPHRVMDAHSGDAADDVAVFSPATTP*

>peptide 2 (51 aa)
MQIVKRSSEWRSTKQFPRMQRIINSNDVDHSLTMNRPVIDFSAGLDVRWLI*

>peptide 3 (50 aa)
MKVRSEGHSEGAGAVEGAHGLALVLAGAVLALDPHLQSLEGFLGLHVLPGA

>peptide 4 (35 aa)
LKLQNLDKASNTQTTPSYSPDTFVVHDCYSEPSIL*

>peptide 5 (34 aa)
MTVILNPQFCNADSKTEQRMAEHQTIPTHATHHK*

Sequence

>CNT30437233
CTGAAATTACAAAATCTTGATAAAGCAAGCAACACACAAACCACCCCCTCATACTCGCCTGATACATTCGTAGTACATGACTGTTATTCTGAACCCTCAA
TTCTGTAATGCAGATAGTAAAACGGAGCAGCGAATGGCGGAGCACCAAACAATTCCCACGCATGCAACGCATCATAAATAGCAACGACGTCGATCACTCA
CTGACCATGAACCGGCCGGTGATAGATTTCAGTGCCGGGCTGGACGTACGGTGGCTGATCTGAGACTCTGAGTCAGTGGTGTCCGTGGTATCCACCGCCG
CCGCCGCCGTAGGTGGGCGTGGGAGGGACGGGGTGGTAGTCCGGGTGTGGCTGGGGCTTGGGCTCCGGCTTGGGCGGCACGGGCTTCTTGTGGTGGAAGT
GCTCGATGATGTGCTTCTTGATCGGCCCGCACAGGGTCATGGACGCGCACTCGGGCGACGCCGCGGACGACGTGGCGGTGTTCTCGCCGGCGACGACGCC
GTAGGTTGTGCCGTCAGACACCGGCACGATCGTGGACGGCTTCTGGCCGGGGCACGGCGCGTTGGAGGCGGCGCTGTGGAGCTGAGCGACGCAGTCGGCG
CCATGAAGGTCAGAAGCGAGGGGCACTCTGAAGGCGCCGGTGCCGTCGAGGGCGCCCACGGCCTTGCGCTCGTACTCGCCGGCGCTGTTCTTGCACTTGA
TCCCCACCTGCAGAGCCTTGAAGGCTTCCTCGGCCTTCATGTTCTTCCTGGTGCAG