« Back to Aegilops tauschii search


Detailed information on CNT30436841


BLAST search results

BLAST vs Swiss-Prot:
sp|Q69UI2|RS131_ORYSJ, E-value = 3e-73

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694623Aegilops tauschiiOryza sativa44.6627.4288.22297forward
CNT30675786Aegilops tauschiiSetaria viridis18.3536.4281.97122forward
CNT30307182Aegilops tauschiiTriticum aestivum19.133.685.04127forward
CNT30131980Aegilops tauschiiLolium perenne23.3125.2495.48155forward
CNT30688700Aegilops tauschiiTriticum urartu20.4532.8584.56136forward
CNT30350258Aegilops tauschiiEragrostis tef59.5536.9487.88396forward
CNT30581348Aegilops tauschiiEchinochloa crusgalli53.0834.1488.39353forward
CNT30117171Aegilops tauschiiOryza nivara41.237.4385.77274forward
CNT3064134Aegilops tauschiiSelaginella moellendorffii7.3723.2291.8449forward

Expression of CNT30436841

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MPFPLLCMRPMAASGGRRRGGRWGEAAVAAERET*

Sequence

>CNT30436841
GTCCCACTAAACTCTCGAAATACTTCTGTCCAGGCACACACGAGCGGTAGCTGATATGTTTAACAGCTTACAACCCCAAAAAGCATTGCTTACTACTTAA
CACAAAACCGAAGTCCAAAGCTGCAGAGAATTACGTCAAGGAACCGAAGCTTAACCGAATCAGGCGGCGGGCATCTTCTTGGTGAGGCGGTAGTAGCGGG
TGAGGCGGTGGACCCGGCTCTCGACGAGGATGAGGCGGAACTTGGCGTCCACGTCCGACCTGTTCCTCTCCAGGTGCTTCCTGATCGCGACGGCCTTCTT
GATGAGGAAGTAGAGGTCCTCGGGCATCTCCGGCGCCAGCCCGCGGGCCTTGAGGAGGCGCACGATCTTGGCGCCGGTGACGGCCTTGGACAGCGGGATG
CCGTAGCCGTCGCGGAGCAGGGCGCCGATCTGCGACGGCAGCTGACCCTTCTTGGCGGCGCGGACGATGATCTCCTCCACGTCCGGCGCGGACGTCTTGA
CCCAGGCCGGGGCCTCCCGCTTGTAGGGGATCACCGAGGACGACATGCCCTTCCCGTTGCTGTGCATGCGTCCCATGGCGGCGAGCGGGGGGCGGCGGCG
AGGAGGGAGATGGGGAGAAGCGGCTGTGGCGGCGGAGAGGGAAACCTAGCAAAAATGGGGCAGTA