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Detailed information on CNT30436322


BLAST search results

BLAST vs Swiss-Prot:
sp|P36886|PSAK_HORVU, E-value = 1e-29

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694964Aegilops tauschiiOryza sativa22.2214.5193.6294forward
CNT30671922Aegilops tauschiiSetaria viridis25.329.6490.65107forward
CNT30520562Aegilops tauschiiSetaria italica34.0432.1492.36144forward
CNT30289849Aegilops tauschiiTriticum aestivum95.5199.02100404forward
CNT30242614Aegilops tauschiiAvena sativa41.3749.0290.86175forward
CNT30659915Aegilops tauschiiTriticum dicoccoides84.498.3597.76357forward
CNT3059741Aegilops tauschiiArabidopsis lyrata28.8438.2481.15122forward
CNT30325346Aegilops tauschiiAsparagus officinalis33.5729.8984.51142forward
CNT30102731Aegilops tauschiiOryza rufipogon34.0429.3992.36144forward
CNT30581501Aegilops tauschiiEchinochloa crusgalli32.3930.8694.16137forward
CNT30118070Aegilops tauschiiOryza nivara21.0415.9294.3889forward

Expression of CNT30436322

Peptides detected in this lncRNA

>peptide 1 (65 aa)
MMKNAWDEAVATPARRYVPLNQRCIHIHCTTPHHQITKGALIDPLHGARDVDAEQLSTEKEGSSR*

>peptide 2 (56 aa)
MIWSRTPEPHASVSASVKPAGSPVCSPDSRASSLSPAVAFLFADGASPNRPANSIRV

Sequence

>CNT30436322
CTCTATGTTGCTCTTTCTATAGCACAAGACGATCTTCACCGTGTGAAAGATACTATAGATGATGAAAAACGCATGGGATGAAGCAGTTGCCACACCGGCG
CGGCGGTACGTCCCGCTGAACCAAAGATGCATACACATACATTGTACTACACCACATCATCAAATCACAAAGGGAGCATTAATTGATCCACTACATGGAG
CGCGCGATGTGGATGCAGAACAGCTATCGACGGAAAAGGAAGGTTCTAGCCGATGATCTGGTCTAGGACGCCGGAGCCGCATGCGAGCGTGTCGGCGAGC
GTGAAGCCGGCCGGGTCGCCCGTCTGCAGCCCGGACTCGCGCGCCTCCAGCTTGAGCCCCGCCGTCGCCTTCCTGTTCGCCGACGGCGCCAGCCCGAACC
GCCCGGCGAACAGCATCAGGGTC