Detailed information on CNT30435859


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30221777Aegilops tauschiiHordeum vulgare28.7755.187.4254forward
CNT30659258Aegilops tauschiiTriticum dicoccoides18.017592.45159forward
CNT30132649Aegilops tauschiiLolium perenne28.3116.5782250forward
CNT30117627Aegilops tauschiiOryza nivara15.1820.484.33134forward

Expression of CNT30435859

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MEVLDDVLLDRSAQGRRRTLWRCQHVRLGAGNDPEGGALRHRHDL*

>peptide 2 (47 aa)
MSSGIFTRKAGELIFHDKIPTTPTHLPDTLTLIIVILNSFCKYWKTG*

>peptide 3 (49 aa)
QESILFLGKDENQALARSLSEKGNSFNLTISLSTSFFFCISHKSTKLFR*

>peptide 4 (55 aa)
MPACSSWRRQRPRRWCPQTPARSLMAPGRSTVRWRRCCGAVRRSRRCGGRRPRAR*

>peptide 5 (78 aa)
MGTSVLGGWVVDWITGVSGVRGIHRHRRHRRWAWEGRGGSPGGAAAWARAWARGRSPGGAGAWAPAWAARASCDGSAR*

>peptide 6 (85 aa)
MMCFLIGPHRVADAHSGDASMFVLAPATTPKVVPSDTGTIFDGSWPEHGALEAVLWSCATQSALWRSAATGTLKAPDECSWSCHA*

Sequence

>CNT30435859
CAAGAATCAATACTATTTTTAGGCAAAGACGAAAACCAAGCTTTAGCACGATCTCTAAGCGAAAAAGGAAATAGCTTCAATTTAACAATATCATTGTCAA
CATCTTTCTTCTTTTGCATATCACACAAATCAACGAAGCTATTTAGATGAGTAGCGGCATCTTCACTAGGAAGGCCGGCGAATTGATCTTTCATGACAAG
ATTCCAACAACACCCACACACTTGCCTGACACACTGACCCTCATAATAGTTATTCTGAACTCATTCTGCAAATACTGGAAAACGGGGTAGGGAATAATAA
AAGGCCAAACCAACTGTGCATGCGGCGATCATAAATAGCAACGTCACTCAGAGCACGAAACCATGGGGACTTCAGTGCTGGGCGGGTGGGTGGTAGACTG
GATCACTGGAGTCAGTGGTGTCCGTGGTATCCACCGCCACCGCCGCCACCGTAGGTGGGCGTGGGAGGGACGGGGTGGTAGTCCGGGTGGGGCTGCGGCT
TGGGCTCGGGCTTGGGCACGGGGCCGTAGTCCGGGTGGGGCTGGGGCTTGGGCTCCGGCTTGGGCGGCACGGGCTTCTTGTGATGGAAGTGCTCGATGAT
GTGCTTCTTGATCGGTCCGCACAGGGTCGCCGACGCACACTCTGGCGATGCCAGCATGTTCGTCTTGGCGCCGGCAACGACCCCGAAGGTGGTGCCCTCA
GACACCGGCACGATCTTTGATGGCTCCTGGCCGGAGCACGGTGCGTTGGAGGCGGTGCTGTGGAGCTGTGCGACGCAGTCGGCGTTGTGGAGGTCGGCGG
CCACGGGCACGCTGAAAGCGCCGGACGAGTGCTCTTGGAGCTGCCATGCCTGAACCTCTGAGTCGCAGCCTGTGTGAAGTGGC