« Back to Aegilops tauschii search


Detailed information on CNT30435717


BLAST search results

BLAST vs Swiss-Prot:
sp|Q76H85|H4_SILLA, E-value = 8e-52

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30549690Aegilops tauschiiIpomoea triloba30.6444.2987.1186forward
CNT30375418Aegilops tauschiiArabidopsis thaliana14.1736.4487.2186forward
CNT30617135Aegilops tauschiiSesamum indicum48.629.4184.75295forward
CNT30178072Aegilops tauschiiSecale cereale56.5163.2897.38343forward
CNT30286550Aegilops tauschiiTriticum aestivum99.51100100604forward
CNT30219776Aegilops tauschiiHordeum vulgare40.8658.9197.98248forward
CNT30656490Aegilops tauschiiTriticum dicoccoides100.1698.3891.61608forward
CNT30261175Aegilops tauschiiBrassica rapa35.9146.1979.82218forward
CNT30720165Aegilops tauschiiTriticum spelta33.7743.71100205forward
CNT30348363Aegilops tauschiiEragrostis tef51.5756.1996.49313forward
CNT30370989Aegilops tauschiiOryza glumipatula46.6245.2896.11283forward
CNT30117618Aegilops tauschiiOryza nivara35.9148.4496.33218forward

Expression of CNT30435717

Peptides detected in this lncRNA

>peptide 1 (72 aa)
MRPEMRFTPPLLARRRMAGLVMPWMLSRSTFLWRFAPPLPSPLPPLPRPDMVADDPLGAAARVGLGGGVVMGC

>peptide 2 (31 aa)
MGEQVTLFRLQLLNIRHGSFLAPGATAGRSC*

Sequence

>CNT30435717
CACGGCATTTGCACGGGAAGACGATATATTCGATTTCACAACTGGGCTCATGGAGCTACAAGGTAACTAGAGAGATTCTGCGATAGACAAATGGGGGAAC
AGGTGACATTGTTCCGGCTACAGCTACTGAACATAAGACATGGCAGTTTCCTCGCGCCCGGGGCCACAGCGGGGCGGAGTTGTTGACTGACGACGAGGCG
GCGACGAGCTGCGGACGAAGGTGGACGCCTAGCCGCCGAAGCCGTAGAGGGTGCGGCCCTGGCGCTTGAGCGCGTAGACGACGTCCATGGCGGTGACGGT
CTTGCGGCGGGCGTGCTCCGTGTAGGTGACGGCGTCGCGGATGACGTTCTCGAGGAAGATCTTGAGCACGCCGCGGGTCTCCTCGTAGATGAGGCCGGAG
ATGCGCTTCACGCCGCCCCTCCTCGCCAGGCGCCGGATGGCCGGCTTGGTGATGCCCTGGATGTTGTCGCGCAGCACCTTCCTGTGGCGCTTCGCGCCGC
CCTTGCCGAGCCCCTTGCCTCCCTTGCCGCGGCCGGACATGGTCGCCGACGATCCTCTTGGAGCTGCTGCGCGAGTGGGATTGGGGGGAGGGGTGGTGAT
GGGTTGC