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Detailed information on CNT30435716


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677535Aegilops tauschiiSetaria viridis18.9369.3884.14145forward
CNT30283765Aegilops tauschiiTriticum aestivum57.9699.3396.85444forward
CNT30384857Aegilops tauschiiTriticum turgidum42.1776.1896.9323forward
CNT30679142Aegilops tauschiiTriticum urartu84.4663.4397.22647forward
CNT30149646Aegilops tauschiiBrachypodium distachyon48.9669.8382.93375forward
CNT30103572Aegilops tauschiiOryza rufipogon30.6822.0786.38235forward
CNT30577940Aegilops tauschiiOryza barthii30.6829.0186.38235forward

Expression of CNT30435716

Peptides detected in this lncRNA

>peptide 1 (67 aa)
MVYRWQVSHMVCRWQVSHMVDHWLVSHIVDHWLVSHIVDHWQVFHIVNHWQAHMVDQWQAAFDMGNH*

>peptide 2 (59 aa)
MVMIRTMRHVISTRTNRQGHFSSRQASRCCISIIRSRWWSVASKWTSTRILSSFREVIY*

>peptide 3 (36 aa)
MGFIVWSAIWCIVGRSPIWCVVGRSPIWWIIGWSPI*

Sequence

>CNT30435716
AGTGTAATCATAAGCATTGGAATTTCCAGCTCTGGTGACGCCTAATTGTTGCATATTACTATTCCCAGCTCTTGAGAGGCCTAATTGCTGAATGCCTCTA
CTAGAATAGCTATCAGTAGGCATATGGTCATGATAAGAACGATGCGACATGTAATCAGCACCAGGACTAACAGGCAAGGGCATTTCTCTAGTAGGCAAGC
GAGCAGATGCTGCATATCTATCATAAGAAGCAGATGGTGGAGCGTCGCTAGCAAATGGACTTCCACTAGGATACTCTCTTCTTTTAGAGAAGTAATCTAC
TGAATCATGGGGTTTATTGTTTGGTCTGCCATATGGTGTATCGTTGGCAGGTCTCCCATATGGTGTGTCGTTGGCAGGTCTCCCATATGGTGGATCATTG
GCTGGTCTCCCATATAGTGGATCATTGGCTGGTCTCCCATATAGTGGATCATTGGCAGGTCTTCCATATAGTGAATCACTGGCAAGCCCATATGGTTGAT
CAATGGCAAGCCGCCTTTGATATGGGGAATCATTAGCAGGCCTTCCATAAGGGGTATCATTGGCAGGCCTTCCATAAGGGGTATCATTGGCAAGCCTTCC
ATATGGTGGATTGGCAGGTCTTCCGTACAGTGTGAATTCCCTGCTAGGAAATATATCAGCAGGAGGACCATCAAAAGAGGAAATTCCATCTCTGAGGATT
CTATCTCTAAGCCTCGAAGCAATCTCTGTGATGGCTTTTCTTGCAATATCTGGAGACCCAGAAACC