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Detailed information on CNT30429187


BLAST search results

BLAST vs Swiss-Prot:
sp|Q1S9I9|H2B1_MEDTR, E-value = 6e-54

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30702570Papaver somniferumQuercus lobata10.562284.55110forward
CNT3072234Papaver somniferumQuercus suber17.1828.4183.24179forward
CNT30379403Papaver somniferumManihot esculenta17.4732.3881.32182forward
CNT30526697Papaver somniferumPhaseolus vulgaris23.4292.7882.38244forward
CNT30630598Papaver somniferumVigna unguiculata25.8248.2981.41269forward
CNT30194853Papaver somniferumPisum sativum24.9534.6789.23260forward
CNT30163367Papaver somniferumPistacia vera24.3830.4985.04254forward
CNT3094085Papaver somniferumSolanum tuberosum27.8357.4382.41290forward
CNT30565715Papaver somniferumActinidia chinensis24.3832.3680.31254forward
CNT30586986Papaver somniferumMusa acuminata10.4630.7982.57109forward
CNT3086649Papaver somniferumVigna radiata19.1926.8183200forward
CNT30510004Papaver somniferumSolanum lycopersicum8.7329.8487.9191forward
CNT30240953Papaver somniferumAvena sativa16.3125.6882.94170forward
CNT30610418Papaver somniferumGossypium raimondii18.9120.4885.79197forward
CNT30205622Papaver somniferumHelianthus annuus7.6829.6387.580forward
CNT30360466Papaver somniferumLactuca sativa28.8971.580.4301forward
CNT30570929Papaver somniferumVitis vinifera26.240.6982.42273forward
CNT30174435Papaver somniferumVigna angularis25.2439.2582.89263forward
CNT30724478Papaver somniferumLupinus angustifolius19.2933.3381.09201forward

Expression of CNT30429187

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MNESSGIYIEALVGFDWFDMFHTDRQSGR*

>peptide 2 (53 aa)
MKHLWLGVSSQLWVSSLLVLFQLVLSRLASSLLVSSRPASSLLSVPSDRKTLR*

Sequence

>CNT30429187
TTTATCAAGATCTTATGCATAAGAGTCAGAGGTGACCAAACTGAATACAGAGAACTCCATTGAACCATCAAGGGTAAACAAATTCTGATCAAATATCAGA
ATAAACCAACAGACTTGAGGAACTACAGACCCTAATTTTAAGAACCCACAAATTCAATATATCAAAATTAAAAATTAGAAATTCTGTAATGAACAAAAAC
CAAATTCGAGATTCATCAAATTAAACAAAGAAAGAGTCGAAATTAATTAAAGATTAGATCCATTCATTCATCACTACCAAGACCCAATTACAAAACGAAA
CACCATTAAAATACTTACAAGGACGAAACCCTAATTTCATACCCGGAAAATAAAGACATAAAGACCCCCAAATACCCTTACGAAACCCTAAGAACTTGTA
AACTTGGTAACAGCTTTGGTACCCTCAGAAACTGCATGCTTAGCCAACTCTCCTGGAAGAACAAGACGAACAGCAGTCTGAATCTCCCTTGAAGTGATAG
TCGGCTTCTTGTTGTACCTCGCCAATCTGGATGATTCAGCAGCAAGCTTCTCAAAGATATCGTTGATGAAACTGTTCATAATACCCATAGCTTTGCTTGA
AATACCGATATCAGGATGAACTTGTTTCAGAACTTTGAAGATGTAGATCTTGTAGGTTTCAATTGATTTCTTAGATCTCTTCTTCTTCTTATCTGTTGAT
GAAGCATCTTTGGCTGGGAGTTTCTTCTCAGCTCTGGGTTTCTTCTCTGCTGGTGCTTTTTCAGCTGGTGCTTTCTCGGCTGGCTTCTTCTCTGCTGGTT
TCTTCTCGGCCGGCTTCTTCTCTGCTTTCGGTGCCATCTGATCGGAAAACTCTAAGATAGATCGGAAAATTAAAGTGGAGGATAGGGATAGACTTTAGAG
AGAGAATATAGGTGAGATGATGATGTGTTGTGGAGAGAATGAATGAGAGTTCTGGGATTTATATAGAGGCGTTGGTTGGATTTGATTGGTTTGATATGTT
TCATACGGATCGACAGTCTGGCCGTTGATTATTGTAAAGGGC