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Detailed information on CNT30417933


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30547454Papaver somniferumIpomoea triloba6.5920.1287.8866reverse complement
CNT30379461Papaver somniferumManihot esculenta6.9923.039070reverse complement
CNT30200216Papaver somniferumPisum sativum6.0920.5490.1661reverse complement

Expression of CNT30417933

Peptides detected in this lncRNA

>peptide 1 (77 aa)
MRYTFGLIKIRLCQPFASCSIKKVLIQKWTEKKVVVQLARLTRLSWNWGTSTHDPSTVKSGRCSLLCETSLTRCPLL*

>peptide 2 (31 aa)
MVMIWDNLKCNEVRSRKRTWGSLESSFLIIS*

>peptide 3 (36 aa)
QVRTLYKQLISKVIASPLSASFSTSSSSSVWFVLTL*

>peptide 4 (33 aa)
MGVTRKLFLNNLLKMIASHSENGHLMFPHSTWK*

Sequence

>CNT30417933
CAGGTTCGTACACTATATAAGCAGTTGATTAGCAAGGTAATAGCTTCTCCTTTGAGTGCTTCGTTCAGCACTTCATCATCATCATCAGTTTGGTTTGTGC
TCACTTTATAATGTCTGTCACGACTCATGATCATTCCTATTATTAAGGTTTGATCCTCTTCCCTTGATTGGCCGCAACTGTACAAGGTTTTACGCTCGAA
CCGCTGACTGCATATGTTGCGAAGAAGCTACTGATCAAATTCAGCTGTGGGAAGAAATCTCTAATACAGTTATTAGGCTTCATGAGTGAAAATTGAATCA
TTGTTAGCCGAAAAACTAAGCCGGCGACGGGGAAGAGACACTCAAAAGTTGTTCCTTTTGTCAAATTGGCCTTTGGGGACACAGACGAACCACTTTATTT
TAAAATTGTATAGTAGTATCATATTTTTCGATTTGTTTTAGGTGCAAAATGGTAATGATTTGGGATAATTTAAAGTGTAACGAGGTTAGGTCCAGGAAAA
GGACATGGGGGTCACTCGAAAGCTCTTTCTTAATAATCTCTTAAAAATGATTGCATCCCACAGTGAGAACGGGCATCTGATGTTCCCCCACTCTACCTGG
AAATGAGATACACGTTCGGGTTGATTAAAATTCGTTTGTGTCAACCTTTTGCATCCTGCAGTATTAAAAAAGTGTTGATTCAAAAATGGACTGAAAAAAA
GGTGGTTGTTCAACTGGCTCGGCTCACCAGGCTGAGTTGGAACTGGGGCACATCGACTCATGATCCTTCCACTGTCAAGAGCGGGAGGTGTTCGTTGCTC
TGTGAAACCAGCCTAACGCGGTGCCCTCTGCTATAGTGATCACACAGCCCAGGCCTACGCCCGGACAGTGCAACCAACTCCCAACTTGGAACGGGCGAGT
CAACATATTGTGCACACCAGCACCTACCAGGTGAAACCCGACCAGTGTTCAACCATCTTAATGTCCCCACTCGGGTTACAAGCTCGCGCGACCAAGCCCG
AC