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Detailed information on CNT30405832


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693909Beta vulgarisOryza sativa27.1815.479.36218forward
CNT30532843Beta vulgarisEucalyptus grandis23.3225.5580.21187forward
CNT30316236Beta vulgarisCorylus avellana16.4628.7683.33132forward
CNT30512774Beta vulgarisJuglans regia54.3634.9482.11436forward
CNT30276060Beta vulgarisChenopodium quinoa27.3134.5485.84219forward
CNT3071371Beta vulgarisQuercus suber30.886.0687.45247forward
CNT30636551Beta vulgarisCapsicum annuum52.3763.6481.19420forward
CNT30192963Beta vulgarisSecale cereale30.9246.4483.87248forward
CNT30224842Beta vulgarisHordeum vulgare28.351.8384.14227forward
CNT3085191Beta vulgarisVigna radiata30.1733.7582.64242forward
CNT30543621Beta vulgarisBrassica napus19.3360.5586.45155forward
CNT30441049Beta vulgarisAegilops tauschii36.9178.3182.77296forward
CNT30312884Beta vulgarisCamelina sativa53.3742.3381.54428forward
CNT30263621Beta vulgarisBrassica rapa53.3736.1882.71428forward
CNT301916Beta vulgarisZea mays29.9358.9785240forward
CNT30212259Beta vulgarisHelianthus annuus25.0630.1384.08201forward
CNT30716253Beta vulgarisMalus domestica golden54.4932.9685.35437forward
CNT30361348Beta vulgarisSorghum bicolor29.9345.6385.83240forward
CNT30596064Beta vulgarisOryza meridionalis30.848.2480.16247forward
CNT30706279Beta vulgarisPrunus avium54.3671.8384.4436forward
CNT30119815Beta vulgarisCitrus clementina36.1663.1885.17290forward
CNT30557952Beta vulgarisPanicum hallii29.9329.4585.83240forward

Expression of CNT30405832

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MPYPSDPFLQSSSGSQALSTWAKVYPFDHSCK*

>peptide 2 (31 aa)
MPIRGDQLRKPLFPFQGKLGHHPEGDLHRWP*

Sequence

>CNT30405832
CAGAAACGATTCTTAACTTATGAAAACAGTTTCACTAATATGAAGGGAAAAAGAGATGGAAAATAGCAACATAAATGGCAAGTTCACTTCACAGACATAA
TCCACGATCATGATATTATTATAGCTTGTCCTCAAACTCAGAAAGCGGGGTCATTTGTTCCTTCAATCCCTTCCTCTTACGGATAACTGACACAAGGGTT
GAAGCTTGTGATCCTGCCTCCAGAGGGTCAGAAGGCATCATTTCCCAATGATCAAACACACACTGGGGGAAAGCCTGACCAGAAGTTGAAGCTCTCAAGG
TACTTGAAAATCCGAATGACTCAACGACAGGGAGGTACGCCTTGATGTTGTAGAGGGGAGTACCAGGTCTGCATAACACGCTTCATCAATGCCTTACCCA
TCAGATCCTTTTCTTCAGTCTTCATCTGGATCCCAAGCTTTGTCAACATGGGCCAAAGTTTATCCTTTTGATCATTCATGCAAGTAGCGATGATCTGTTT
GATGGGCTCATAGCAAAATTGAACAAAACCACGCTTACAACTGGCATTGCCAGAGTTCTTGGTTGTCCACTTCTTGGTGGCTGGGTCAAAAAAGTTCTCA
CCCCAAAGACGTTCCATCATCTTAGACTCATCAACTCCAAACTTGGATGCATACATCTTAGCAAAGTTGGACAAAGTAAATGCCCATCCGTGGAGACCAG
CTGAGAAAGCCACTGTTCCCTTTTCAGGGTAAACTTGGACATCACCCAGAAGGGGATCTTCATAGGTGGCCATGATGACATTTGCATTCTCAATAACCTT
CT