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Detailed information on CNT30403855


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LSY0|ASK7_ARATH, E-value = 2e-10

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30317531Beta vulgarisCorylus avellana20.3325.1790.5474reverse complement
CNT30516841Beta vulgarisJuglans regia22.251090.1281forward
CNT30277986Beta vulgarisChenopodium quinoa32.975.8389.17120forward
CNT3097013Beta vulgarisSolanum tuberosum22.2518.2486.4281forward
CNT30171771Beta vulgarisTrifolium pratense28.5727.8181.73104forward
CNT30137123Beta vulgarisLolium perenne21.714.5886.0879forward
CNT30365074Beta vulgarisSorghum bicolor20.0511.1584.9373forward
CNT3054174Beta vulgarisAmborella trichopoda25.5511.4588.1793forward
CNT30112782Beta vulgarisFicus carica23.0810.189.2984forward
CNT30114991Beta vulgarisEutrema salsugineum22.88.1984.3483forward
CNT3039962Beta vulgarisMarchantia polymorpha22.254.5687.6581forward

Expression of CNT30403855

Peptides detected in this lncRNA

>peptide 1 (57 aa)
MLNVFLISSAQSSSTMCLIVCDSRATDSSTSNVSPSELFKVIFLVDAIKIFAGFEKL*

>peptide 2 (39 aa)
MSRHRSSSRLSSLLTPLKSLQVSKNSNPNPRREKLSESW*

Sequence

>CNT30403855
GTCTCTTTTGTGCCTTGAACATCACTCGAAGGCCCATTGATTCTCCCTGCGGACCTCTTCCTCTTCCTCTGGAGTGAAGTCATTTTTAATGTTGAATGTC
TTCCTAATCTCTTCAGCGCAATCATCTTCAACCATGTGCTTAATCGTCTGCGATTCAAGAGCAACCGACTCTTCTACCTCGAATGTCTCGCCATCGGAGC
TCTTCAAGGTTATCTTCCTTGTTGACGCCATTAAAATCTTTGCAGGTTTCGAAAAACTCTAACCCTAACCCTAGGAGAGAGAAACTAAGTGAGAGCTGGT
GAGGAGAGCGGGAGACGAAACGGGTGAGAACCAAGGTGTGGAATTTTTTTGGGGGAGATTATAA