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Detailed information on CNT3040196


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678495Marchantia polymorphaSetaria viridis29.1220.9184.3483forward
CNT30522442Marchantia polymorphaSetaria italica29.1210.1884.3483forward
CNT30641545Marchantia polymorphaNymphaea colorata35.0911.7686100forward
CNT30513785Marchantia polymorphaJuglans regia35.0916.0884100forward
CNT30371574Marchantia polymorphaArabidopsis thaliana22.8112.5787.6965forward
CNT30618119Marchantia polymorphaSesamum indicum34.3919.186.7398forward
CNT3019440Marchantia polymorphaCitrullus lanatus34.3925.8684.6998forward
CNT30125080Marchantia polymorphaPhyscomitrium patens37.5416.3683.18107forward
CNT30540068Marchantia polymorphaBrassica napus22.818.8487.6965forward
CNT30264705Marchantia polymorphaBrassica rapa22.817.7587.6965forward
CNT308929Marchantia polymorphaZea mays29.1227.5784.3483forward
CNT30716553Marchantia polymorphaMalus domestica golden35.0915.2286100forward
CNT30623157Marchantia polymorphaDaucus carota34.399.986.7398forward
CNT30349302Marchantia polymorphaEragrostis tef29.1214.9584.3483forward
CNT30356986Marchantia polymorphaLactuca sativa31.2315.1183.1589forward
CNT30320781Marchantia polymorphaAsparagus officinalis30.1810.4984.8886forward
CNT30148341Marchantia polymorphaBrachypodium distachyon29.1228.3383.1383forward

Expression of CNT3040196

Peptides detected in this lncRNA

>peptide 1 (63 aa)
MGQLPELAQRSNGPCQSLPQKAGGEGHVDDDFLLSGLLLTPDGDQVAPSNPSDPSCNVQEDDSG

>peptide 2 (59 aa)
KYTRPEHNTHCCFCEKRTHLPESDCYKVFTHGTASRARSTQQRAMSVPSTKGWWRGARR*

Sequence

>CNT3040196
TAAAGTACACACGGCCTGAGCACAACACACACTGTTGCTTCTGTGAAAAAAGGACTCATTTGCCAGAAAGTGATTGCTACAAAGTCTTTACACATGGGAC
AGCTTCCAGAGCTCGCTCAACGCAGCAACGGGCCATGTCAGTCCCTTCCACAAAAGGCTGGTGGCGAGGGGCACGTCGATGATGATTTCCTTCTCAGTGG
GCTTCTTCTCACCCCTGATGGCGATCAAGTAGCTCCTTCCAACCCATCCGATCCATCCTGCAATGTACAAGAAGACGACTCCGGG