Detailed information on CNT30401950


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8RXF1|SF3A1_ARATH, E-value = 4e-50

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30381317Beta vulgarisManihot esculenta24.5553.6584.95206forward
CNT3091352Beta vulgarisSolanum tuberosum20.7428.7183.91174forward
CNT30113599Beta vulgarisFicus carica14.1821.7284.87119forward

Expression of CNT30401950

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MDTGKGIGGRFIIICCCPGGICIGGGGAISPPEVGAEY*

>peptide 2 (90 aa)
MTIPYDLLRLLIFFLLYLSFDGIRYFFLRGTEDIRTSTCKSYNVSGNFIIMSKGCLPNLGKLRPIFGHKLCSLINDVSDIWRRVNNSNGSC

>peptide 3 (46 aa)
MTCLGCSSFFFSISALTALDTSSSVVPKISGRVRASPTMFLEISSS*

>peptide 4 (85 aa)
LGKELLFWNQCGVIILLSLGLWFIWKRRRSFIWWWWWRWHSLRHRQLWNRRHTMWWTSCEGTVTKQWCKLRSRWHWHTGLGHGHR*

>peptide 5 (41 aa)
WARNCSSGISAESSYFCLLGSGSSGSGGGASSGGGGGGGIP*

>peptide 6 (43 aa)
GQGTALLESVRSHHTSVSWALVHLEAEEELHLVVVVEVAFLEA*

Sequence

>CNT30401950
TTGGGCAAGGAACTGCTCTTCTGGAATCAGTGCGGAGTCATCATACTTCTGTCTCTTGGGCTCTGGTTCATCTGGAAGCGGAGGAGGAGCTTCATCTGGT
GGTGGTGGTGGAGGTGGCATTCCTTGAGGCATAGGCAGCTGTGGAACAGGAGGCATACCATGTGGTGGACCAGCTGTGAAGGGACGGTGACCAAGCAGTG
GTGTAAATTGAGATCCAGGTGGCACTGGCATACCGGGTTGGGTCATGGACACAGGTAAAGGCATTGGTGGTCGATTCATCATCATATGCTGCTGCCCAGG
AGGCATTTGCATAGGAGGAGGTGGAGCCATAAGTCCGCCAGAGGTTGGAGCTGAATACTGAATATTGCTAGTTGGTACACGAGGCATATTCACAGCTAGC
CCAGCAGGGGGAGGGAGTGGACGAATCATGGGAACAACTGGTCTTGGAGGAGGAGGAGCAGCTGGACCAGGGAAAGGCCTTCCATCATTGTTGCCGTCAA
TTTGATCTTCCCCACCCATACCCTGAGACATAGCCTGGTTTGCTGTGCGACCGATGCTACCTGTATGACCATCCCATATGACTTGCTTAGGCTGCTCATC
TTTTTTCTTCTCTATCTCAGCTTTGACGGCATTAGATACTTCTTCCTCCGTGGTACCGAAGATATCAGGACGAGTACGTGCAAGTCCTACAATGTTTCTG
GAAATTTCATCATCATGAGCAAGGGTTGTCTCCCGAATCTTGGCAAACTCAGGCCCATTTTTGGCCACAAACTGTGCAGTCTTATCAACGATGTTTCTGA
TATCTGGAGGAGGGTGAATAATTCCAATGGTTCTTGTAT