Detailed information on CNT3039962


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FHW7|SKP1B_ARATH, E-value = 4e-48

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671810Marchantia polymorphaSetaria viridis3.4925.188.7162forward
CNT30317531Marchantia polymorphaCorylus avellana4.0524.4986.1172reverse complement
CNT30277964Marchantia polymorphaChenopodium quinoa7.7122.8784.67137forward
CNT30403855Marchantia polymorphaBeta vulgaris4.5622.2587.6581forward
CNT3097013Marchantia polymorphaSolanum tuberosum6.6926.882.35119forward
CNT3060039Marchantia polymorphaArabidopsis lyrata5.1723.7184.7892forward
CNT30259882Marchantia polymorphaBrassica rapa8.5539.7981.58152forward
CNT30135602Marchantia polymorphaLolium perenne6.7521.4382.5120forward

Expression of CNT3039962

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MFLSKLHVLILDSNLYILYLTRQVELDNP*

>peptide 2 (61 aa)
MISTILDYLGKDLTRYVRQRNGIVRTSVLNHVFDSLRLISHSLIDLEHLIIGGLQLHLVLP*

>peptide 3 (47 aa)
MSMTVIKDSAKECNHHERKRPCPSLDCPRFHDGGIGRVCRLYITDYG*

>peptide 4 (47 aa)
TRTSTAIRKGSELLGNQFYFMIADPCDCPGLNTNFTSSKACRTGADL*

>peptide 5 (54 aa)
MSEIRTPPSPHSTATQARAPQTLDFRLNSTPKLPPIEMLDRAVRSKTMKRRTRR*

>peptide 6 (69 aa)
MCNVNHNKRSTRRKEHSDTTKVSSRSEFVSAPPCFRCEEVYMKTTENFWRHSDHLILCLMELCHKGEAP*

>peptide 7 (39 aa)
MFQTLPTKDHLLYYRRRKVNLTKRSMATLLGQLLQLLSP*

Sequence

>CNT3039962
GACCAGAACATCAACTGCAATCAGGAAAGGGTCTGAATTGTTGGGCAACCAATTTTATTTTATGATTGCGGATCCTTGCGACTGCCCTGGACTAAATACC
AATTTCACAAGTTCAAAAGCTTGTCGTACTGGAGCAGACTTGTGAATACATCAATCACCCTCGTCCAAAATGTGAAAGCAAGGGTTTGTCCGCAAATGTT
TCTAAGCAAGCTCCATGTACTGATCCTAGATTCAAATTTGTATATCTTATATCTTACAAGGCAAGTCGAATTGGACAACCCTTAGAGTAAGCAAACACCG
AAAGATCAATAACCCGCACCAGCCTTAGATTTGAAAAACCGTGATTACCTTACGTTCTGCCGTGGCGGCGCCTGAAGCTTGTAACTTAAAAGAACTCAAA
CGAATATAAAACTACGATACGATTTTGCTGTACTGAAAAGCATGTTTCAAACACTTCCAACAAAAGATCATCTACTGTATTATAGAAGGAGAAAAGTCAA
CCTTACAAAGAGGAGCATGGCTACACTATTGGGACAACTTCTTCAGCTGTTATCGCCCTAGCCCTCGATCACTCTAACACGGCAAGTGCTAGCACGTCAA
AATCTTCCTTTCATGTCAATGACTGTAATAAAGGACAGCGCGAAAGAGTGCAACCATCATGAGAGAAAACGCCCATGTCCTAGTTTAGATTGTCCCCGAT
TCCACGATGGAGGCATAGGCCGGGTGTGTAGACTGTACATAACTGACTACGGCTAGAATGTGCAACGTCAACCATAACAAGAGATCAACACGACGGAAAG
AACACTCGGACACAACGAAAGTATCCTCGCGCAGTGAATTTGTTTCTGCTCCGCCATGTTTCAGATGCGAAGAGGTTTACATGAAAACCACTGAAAACTT
CTGGCGGCATTCAGATCACTTAATACTATGTCTTATGGAGTTGTGTCACAAGGGAGAGGCTCCATAAAGTCTAGTCAGAACGGAGATCTACCGCCGCTGT
GAGCACGAAGTTACTCGAAGGCCCATTGATTCTCCCTTCTAACCTCTTCTTCCTCCTCTGGCGTGAAGTCGTTCTTTATGTTGAACGTCTTCCGGATTTC
TTCTGGAGTCTTACCCTTGATCATATCGGCCACTGTTTGACATGTCAAATCCAGGAGGTTTTTGATATTCAAGGAACACTTACCAAGATGAGATCGAAGA
GAGTGGCCTGATCCACCTTCACAAACTCAGCATCCCACTGCTTAATCTCATCTTCAGGGACGGCCGGCTTCTCGTCCGAGATCTTCTGAGACTCCACATG
ATATCGACAATACTCGATTACCTTGGCAAGGATCTTACTCGATACGTTAGGCAGAGGAATGGGATTGTCCGTACCAGTGTCCTCAATCATGTTTTTGACA
GTCTGCGACTCATAAGCCACAGTCTCATCGACCTCGAACATCTCATCATCGGAGGACTTCAGCTTCACCTTGTTCTCCCGTGACATCTTGGCACCTACGC
TCCCACCACCACCAGAAACACAGGCAGCAGGCAGACACAGCAAGACAGGCCTACAACCTCGAAATCTCCAAGCTGGTTTCCGAGAGGAAAAGACGATGTC
AGAGATCAGAACACCGCCCTCACCGCACAGCACAGCAACGCAAGCGCGGGCTCCCCAAACTCTTGACTTCAGACTGAACTCCACACCAAAGCTCCCACCG
ATTGAAATGCTCGATCGTGCCGTGAGGTCGAAGACTATGAAGAGAAGGACGCGCAGATGAGGCGAAACGGAAGGATAT