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Detailed information on CNT30398990


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691571Triticum turgidumOryza sativa29.915.1186.72128forward
CNT30184327Triticum turgidumSecale cereale29.6759.6296.85127forward
CNT30226134Triticum turgidumHordeum vulgare68.2224.7291.1292forward
CNT30552492Triticum turgidumOryza glaberrima29.915.9285.94128forward
CNT30140682Triticum turgidumLolium perenne30.844.6693.94132forward
CNT309471Triticum turgidumZea mays29.219.1186.4125forward
CNT30688313Triticum turgidumTriticum urartu88.0840.0697.35377forward
CNT30595788Triticum turgidumOryza meridionalis27.19.5885.34116forward
CNT30369516Triticum turgidumOryza glumipatula29.915.1685.94128forward
CNT30575434Triticum turgidumOryza barthii29.914.1585.94128forward
CNT30495872Triticum turgidumDigitaria exilis28.977.3987.1124forward
CNT30603626Triticum turgidumOryza punctata28.974.9387.1124forward
CNT30556231Triticum turgidumPanicum hallii29.215.988125forward

Expression of CNT30398990

Peptides detected in this lncRNA

>peptide 1 (76 aa)
PQLTESKQICHSVPTTTLSLSPLASAFPPTFPSPKNQFHAPAARNLQFSIIVLLPLGFQPPPWNPRPSADPSPAAF*

>peptide 2 (38 aa)
MESAAVCRSFTSRLLGPPRLPQPGMLGLGRVWPPAPRV*

Sequence

>CNT30398990
CCCCAATTAACCGAGAGTAAACAAATCTGCCATTCTGTACCCACGACTACTCTTTCCCTCTCCCCTCTCGCCTCCGCCTTCCCTCCGACTTTTCCCTCGC
CGAAAAACCAATTCCATGCTCCAGCAGCACGCAACCTCCAATTCTCCATTATAGTATTGCTCCCGCTAGGGTTCCAGCCGCCTCCATGGAATCCGCGGCC
GTCTGCAGATCCTTCACCAGCCGCCTTTTAGGTCCGCCTCGCCTCCCGCAGCCGGGAATGCTTGGTCTCGGGCGCGTCTGGCCGCCTGCGCCGAGGGTTT
GAGTTATTGCATGTGGTGGCACCAAGCATGAGGCGACAACTGCATTACTTGCAAGGAAGTTACAAAATCTATGGGTCATCATAATCGTGACTTTCTTGCA
AGTTGTGCAGTTGCTGTCTCAAGCTTGC