Detailed information on CNT30397926


BLAST search results

BLAST vs Swiss-Prot:
sp|P84516|PER1_SORBI, E-value = 4e-132

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522973Triticum turgidumSetaria italica6.432.8185.5483forward
CNT30185870Triticum turgidumSecale cereale26.9970.1492.29350forward
CNT30305288Triticum turgidumTriticum aestivum31.7759.97100412forward
CNT30221586Triticum turgidumHordeum vulgare3.723.5391.6748forward
CNT30130532Triticum turgidumLolium perenne4.721.1191.861forward

Expression of CNT30397926

Peptides detected in this lncRNA

>peptide 1 (86 aa)
MVCTMDGHWSASAAAGPGLGAEQFRRTSPWSLVWTLICPILPMDTPNWSKNSRWLRAKRSTMGRVMALVKRSWSETKSPSRFTRST*

>peptide 2 (95 aa)
MSAQETTAPRHSRSSRSRMSLTALKAEGRSVRLGGACCSPGPVAEPSSSTEASQPCTKQSWKWRRRRPAARPMSLRTASWTNSRTMDSARGQVRR*

>peptide 3 (55 aa)
MVWPPEIVTRSVASRPRGRSRARSDGTLEDGPGRPDSTSCRVAKRRLSRRPRGTR*

>peptide 4 (33 aa)
MLLTEEREPCPPSLCVTRLLRFSIHAADRDINL*

>peptide 5 (79 aa)
MLLQASQGFLRLRQRWSAQWTATGARRRRQGRDWGRSSSGGPLLGRWCGPSSAPSCPWTRRTGRRIPAGSAQSARRWAG*

>peptide 6 (63 aa)
MAPAGRTARPAAWRSDGCHGGREARGSPARRRRPRSRGPRARGCRRRRRRRRGTRAPAGHGCR*

Sequence

>CNT30397926
GCATGGTAGCTGAAAATGATATCCAGTTTGGTTACTTTATTTATTTCGACATGACTAACAGCTACTAGTCCACTTGTCTAGATGCTACTACAAGCTAGCC
AAGGCTTTCTTCGGCTGCGTCAACGATGGTCTGCACAATGGACGGCCACTGGAGCGCGTCGGCGGCGGCAGGGCCGGGATTGGGGGCGGAGCAGTTCCGG
CGGACCTCTCCTTGGTCGCTGGTGTGGACCCTCATCTGCCCCATCTTGCCCATGGACACGCCGAACTGGTCGAAGAATTCCCGCTGGCTCCGCGCAAAGC
GCTCGACGATGGGCCGGGTGATGGCGTTGGTGAAGAGGTCCTGGTCGGAGACGAAGAGCCCCTCCCGGTTCACCAGGTCGACATAGTACTGGTTGTCGAA
CACGTCGGGCGTGCGCACGTCCAGCACGGTGCGGCGGTCGGTGCCCTTGGCCGGACAGGTTCCCTTCAGCCTGGCGAGGAAGGGGGGGGTTGATAGTGGG
GTCGGGACGAGGGAAGAGGCGATCCTCGAAGGAGGAGCAGTGCGCCTGCCCGATGGTGTGGCCGCCGGAGATCGTGACGAGGTCGGTGGCGTCGAGGCCG
AGGGGGCGGAGCAGGGCGAGGAGCGACGGCACGTTGGAGGATGGCCCCGGCAGGCCGGACAGCACGTCCTGCCGCGTGGCGAAGCGACGGCTGTCACGGC
GGCCGAGAGGCACGCGGTAGTCCGGCCCGCCGGAGACGACCACGGAGTCGCGGGCCGCGAGCGCGAGGATGTCGGCGCAGGAGACGACGGCGCCGCGGCA
CTCGCGCTCCAGCCGGTCACGGATGTCGTTGACGGCCTTGAAGGCGGAGGGGCGGAGCGTGAGGTTGGGCGGCGCCTGCTGCTCCCCCGGCCCCGTGGCC
GAGCCGTCGAGCAGCACGGAGGCGTCGCAGCCCTGCACGAAGCAGTCGTGGAAGTGGAGGCGGAGGAGGCCCGCGGCGAGGCCGATGTCCTTGCGCACGG
CGTCCTGGACGAACTCGCGCACGATGGACTCCGCCCGCGGGCAGGTCCGCCGGTAGAAGTCGAACGACAGACCGCGCGCCACCGGAGGCTCGGCCGCAGA
AGCCCCAGGCCCAAGCGAGCTGGCCACTACCACCGCCACCGCCACCGCCACCACAAATGCTGCTAACAGAGGAGCGTGAGCCATGTCCTCCCTCCTTGTG
TGTGACCCGGCTGCTACGTTTTTCTATCCACGCCGCTGATCGGGACATCAATTTGTAGGCAGGATTCAAGGGTAGCACACCACCTGATTACTCATCG