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Detailed information on CNT30396824


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONMEST004927, E-value = 6e-20

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30524663Triticum turgidumSetaria italica41.7172.1698.57420reverse complement
CNT30641615Triticum turgidumNymphaea colorata43.6979.4289.77440reverse complement
CNT30549212Triticum turgidumIpomoea triloba76.4625.5291.56770reverse complement
CNT30272552Triticum turgidumChenopodium quinoa75.4760.4189.74760reverse complement
CNT30730494Triticum turgidumCorchorus capsularis76.0787.0591.78766reverse complement
CNT30220801Triticum turgidumHordeum vulgare33.1786.0899.4334reverse complement
CNT30569398Triticum turgidumActinidia chinensis63.8532.9191.6643reverse complement
CNT30552690Triticum turgidumOryza glaberrima74.9849.3197.75755reverse complement
CNT30442196Triticum turgidumAegilops tauschii71.885.2699.17723forward
CNT3017993Triticum turgidumZea mays74.6839.9698.94752reverse complement
CNT30207763Triticum turgidumHelianthus annuus69.5175.5193.29700reverse complement
CNT30688674Triticum turgidumTriticum urartu74.9857.3399.34755reverse complement
CNT30720843Triticum turgidumTriticum spelta21.3510099.07215reverse complement
CNT30347837Triticum turgidumEragrostis tef60.6879.2598.36611forward
CNT30363261Triticum turgidumSorghum bicolor39.9231.5898.26402reverse complement
CNT30620564Triticum turgidumCajanus cajan7214.0191.72725forward
CNT30596724Triticum turgidumOryza meridionalis38.3315.9698.45386forward
CNT30354697Triticum turgidumLactuca sativa34.5649.2997.13348reverse complement
CNT30410483Triticum turgidumPapaver somniferum76.0737.4492.56766reverse complement
CNT30642274Triticum turgidumCannabis sativa69.6185.888.02701forward
CNT3036965Triticum turgidumCucumis melo68.8295.1991.77693reverse complement
CNT30150154Triticum turgidumBrachypodium distachyon74.986698.54755reverse complement
CNT30104374Triticum turgidumOryza rufipogon74.9856.8597.48755forward
CNT30497700Triticum turgidumDigitaria exilis18.473498.92186forward
CNT30174498Triticum turgidumVigna angularis39.4278.6187.91397reverse complement

Expression of CNT30396824

Peptides detected in this lncRNA

>peptide 1 (29 aa)
AFFWFFHLFIKELNNEDRWQVPDRFDQAV*

>peptide 2 (37 aa)
MKIDGKCLIDLIRPCRNKVQIVRSLGCLSCIHHCTST*

>peptide 3 (41 aa)
MGEQPNPWNHLQLQVAKSRHRGAKPSRRCGLLGKISLLSLE*

>peptide 4 (66 aa)
MGGEPVAVSAVIPEALGKSEERSLILGWDYYLYAFSSYPLRTWLPSVYRRHDYWYTRGASFPVLSY*

>peptide 5 (44 aa)
MGGEPVAVSIDGKCLIDLIRPCRNKVQIVRSLGCLSCIHHCTST*

>peptide 6 (56 aa)
MLSAVILSALGYPAFTVGTITGTPEVRPSRSSRTRERSSQCSNAHTGYGPNCLMTF*

Sequence

>CNT30396824
GCTTTTTTTTGGTTTTTTCATCTTTTCATCAAAGAGTTGAACAATGAAGATAGATGGCAAGTGCCTGATCGATTTGATCAGGCCGTGTAGGAACAAGGTT
CAAATCGTTCGTTCGTTAGGATGCCTCAGCTGCATACATCACTGCACTTCCACTTGACACCTATTTAAACGGCTCGTCTCGCCGCTACCTTATCCTATTT
CCATACTTCTGTCGCTCCATCCCCGTATGGGTGGAGAACCCGTCGCTGTCTCGATAGATGGCAAGTGCCTGATCGATTTGATCAGGCCGTGTAGGAACAA
GGTTCAAATCGTTCGTTCGTTAGGATGCCTCAGCTGCATACATCACTGCACTTCCACTTGACACCTATTTAAACGGCTCGTCTCGCCGCTACCTTATCCT
ATTTCCATACTTCTGTCGCTCCATCCCCGTATGGGTGGAGAACCCGTCGCTGTCTCGGCTGTGATACCGGAGGCTCTAGGGAAGTCGGAGGAGAGATCAC
TCATCTTGGGGTGGGATTACTACTTATATGCTTTCAGCAGTTATCCTCTCCGCACTTGGCTACCCAGCGTTTACCGTAGGCACGATTACTGGTACACCAG
AGGTGCGTCCTTCCCGGTCCTCTCGTACTAGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCATGACGTTCTGAAC
CCAGCTCACGTACCGCATTAATGGGCGAACAGCCCAACCCTTGGAACCACCTACAGCTCCAGGTGGCGAAGAGCCGACATCGAGGTGCCAAACCTTCCCG
TCGATGTGGACTCTTGGGGAAGATCAGCCTGTTATCCCTAGAGTAACTTTTATCCGTTGAGCGACGGCCCTTCCACTCGGCACCGTCGGATCACTAAGGC
CGACTTTCGTCTCTGCTCGACGGGTGAGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGACCAATGTCCGTCTGGCTCGAGGAAACCTTTGCA
CGCCTCC