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Detailed information on CNT30395424


BLAST search results

BLAST vs Swiss-Prot:
sp|Q43217|H2B3_WHEAT, E-value = 2e-56

BLAST vs NONCODE:
NONGMAT000269, E-value = 9e-45

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693619Triticum turgidumOryza sativa43.2432.8695.67208forward
CNT30671720Triticum turgidumSetaria viridis38.4641.297.3185forward
CNT30523142Triticum turgidumSetaria italica52.8148.8595.67254forward
CNT30315505Triticum turgidumCorylus avellana37.2139.1788.83179forward
CNT30518328Triticum turgidumJuglans regia56.9652.983.58274forward
CNT30618877Triticum turgidumSesamum indicum55.0933.6780.75265forward
CNT3072234Triticum turgidumQuercus suber36.5927.9480.11176forward
CNT30379403Triticum turgidumManihot esculenta24.1220.6483.62116forward
CNT30630598Triticum turgidumVigna unguiculata53.4346.1482.1257forward
CNT30163367Triticum turgidumPistacia vera24.1213.9381.9116forward
CNT30565715Triticum turgidumActinidia chinensis57.3835.1685.51276forward
CNT30586986Triticum turgidumMusa acuminata53.2272.3289.06256forward
CNT30552027Triticum turgidumOryza glaberrima59.2552.8895.09285forward
CNT30241394Triticum turgidumAvena sativa59.0454.195.42284forward
CNT30666231Triticum turgidumTriticum dicoccoides95.017399.34457forward
CNT30130711Triticum turgidumLolium perenne59.8842.3596.18288forward
CNT303693Triticum turgidumZea mays28.2739.4298.53136forward
CNT30606042Triticum turgidumGossypium raimondii27.8643.9384.33134forward
CNT30231835Triticum turgidumAnanas comosus24.7418.3194.96119forward
CNT3066775Triticum turgidumLeersia perrieri26.8233.5996.9129forward
CNT30129800Triticum turgidumCorymbia citriodora57.834.5389.57278forward
CNT30686967Triticum turgidumTriticum urartu56.3446.6499.63271forward
CNT30346527Triticum turgidumEragrostis tef36.883.8996.05177forward
CNT30363575Triticum turgidumSorghum bicolor60.7131.6796.23292forward
CNT30619778Triticum turgidumCajanus cajan27.2319.7989.31131forward
CNT30596761Triticum turgidumOryza meridionalis44.4927.0993.46214forward
CNT30360078Triticum turgidumLactuca sativa24.7415.0384.87119forward
CNT30369169Triticum turgidumOryza glumipatula61.1251.3194.22294forward
CNT30327286Triticum turgidumAsparagus officinalis56.9630.3190.51274forward
CNT30149313Triticum turgidumBrachypodium distachyon24.7434.194.96119forward
CNT30103076Triticum turgidumOryza rufipogon38.4630.6894.59185forward
CNT30577496Triticum turgidumOryza barthii41.7937.6494.53201forward
CNT30174435Triticum turgidumVigna angularis57.3841.1980.43276forward
CNT3065708Triticum turgidumSelaginella moellendorffii26.6136.8985.16128forward

Expression of CNT30395424

Peptides detected in this lncRNA

>peptide 1 (44 aa)
FKQQHHYFFKSASSTILTEIVTSYCCQLRTRRLPPSAHDTDDEA*

>peptide 2 (38 aa)
IQTATSLFLQVRKQHNSYRDCNIVLLPTTYTTPATISS*

>peptide 3 (29 aa)
MSLMKEFMMDMALEEMPMSGCTCLSTLKM*

Sequence

>CNT30395424
GATTCAAACAGCAACATCACTATTTCTTCAAGTCCGCAAGCAGCACAATTCTTACAGAGATTGTAACATCGTACTGTTGCCAACTACGTACACGACGCCT
GCCACCATCAGCTCATGACACAGACGATGAAGCCTAGGATGAGGTGAACTTGGTGACGGCCTTGGTGCCCTCAGAGACGGCGTGCTTGGCGAGCTCGCCG
GGGAGGACGAGGCGGACGGAGGTCTGGATCTCCCGGGACGTGATGGTGGGCTTCTTGTTGTAGCGGGCGAGCTTGGCGGACTCGCCGGCGAGCTTCTCGA
AGATGTCGTTGATGAAGGAGTTCATGATGGACATGGCCTTGGAGGAGATGCCGATGTCCGGGTGCACCTGCTTGAGCACCTTGAAGATGTAGATCTTGTA
CGTCTCCACGCCCTTCTTGGCCTTGCTGCCCTTCTTCCGGCCCCTCGTCTTCCCCTCGCCGCCGGCCTCCTTGGTCGCCGG