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Detailed information on CNT30395404


BLAST search results

BLAST vs Swiss-Prot:
sp|A3F5L3|DES2_SORBI, E-value = 3e-55

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30617758Triticum turgidumSesamum indicum15.6924.3589.2956forward
CNT3021318Triticum turgidumCitrullus lanatus53.521.6180.63191forward
CNT30304072Triticum turgidumTriticum aestivum98.8832.397.17353forward
CNT30225510Triticum turgidumHordeum vulgare73.9588.5996.59264forward
CNT30559188Triticum turgidumActinidia chinensis48.4616.6779.77173forward
CNT30442203Triticum turgidumAegilops tauschii98.8832.0696.88353forward
CNT30254552Triticum turgidumAvena sativa24.3719.5191.9587forward
CNT30666984Triticum turgidumTriticum dicoccoides10036.77100357forward
CNT3075396Triticum turgidumBrassica juncea48.7438.1679.89174forward
CNT30139418Triticum turgidumLolium perenne57.4218.3494.15205forward
CNT30650498Triticum turgidumRosa chinensis36.9723.482.58132forward
CNT30717698Triticum turgidumMalus domestica golden35.8520.7581.25128forward
CNT30364958Triticum turgidumSorghum bicolor59.6618.4387.32213forward
CNT30620011Triticum turgidumCajanus cajan26.053.782.893forward
CNT30154726Triticum turgidumPrunus persica24.3712.3983.9187forward
CNT30705704Triticum turgidumPrunus avium24.374.2985.0687forward
CNT30323306Triticum turgidumAsparagus officinalis22.4120.1583.7580forward
CNT30575127Triticum turgidumOryza barthii31.098.8990.09111forward
CNT30583774Triticum turgidumEchinochloa crusgalli66.3913.8887.76237forward

Expression of CNT30395404

Peptides detected in this lncRNA

>peptide 1 (88 aa)
DGVVVDVRGVPRQRLLLLGDEHLIALQRPGVRVVATVAVLPREVGDEQPRVEHQADGVIEQRVVGEGVMAALVRDDPDAGHGPRRRRT*

>peptide 2 (31 aa)
RRGCCRCKGCTTPAPPSAWGRTPHRAPATRC*

>peptide 3 (43 aa)
MTQTPVMDHVGEGLDDGALEAVRRDCLLDLTQRERRLVRRRALV

Sequence

>CNT30395404
CGACGGGGTTGTTGTAGATGTAAGGGGTGTACCACGCCAGCGCCTCCTTCTGCTTGGGGACGAACACCTCATCGCGCTCCAGCGACCCGGTGTTAGAGTG
GTGGCGACGGTGGCTGTACTTCCACGAGAAGTAGGGGACGAGCAGCCACGAGTGGAGCACCAGGCCGACGGTGTCATCGAGCAGCGAGTAGTCGGAGAAG
GCGTGATGGCCGCACTCGTGCGCGATGACCCAGACGCCGGTCATGGACCACGTAGGAGAAGGACTTGATGATGGAGCGCTGGAAGCAGTGAGGCGGGATT
GCCTTCTTGATCTGACCCAGCGTGAACGGCGGCTTGTCCGTCGGCGAGCGCTGGTAG