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Detailed information on CNT30394717


BLAST search results

BLAST vs Swiss-Prot:
sp|Q76H85|H4_SILLA, E-value = 2e-52

BLAST vs NONCODE:
NONBNAT006984, E-value = 7e-18

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30186872Triticum turgidumSecale cereale65.4866.1396.97330forward
CNT30299936Triticum turgidumTriticum aestivum10092.31100504forward
CNT30219776Triticum turgidumHordeum vulgare48.2157.7296.3243forward
CNT30441099Triticum turgidumAegilops tauschii71.6369.9695.29361forward
CNT30252143Triticum turgidumAvena sativa70.8334.5393.28357forward
CNT30664208Triticum turgidumTriticum dicoccoides86.3186.4894.48435forward
CNT30687044Triticum turgidumTriticum urartu63.131.2196.86318forward
CNT30645456Triticum turgidumCannabis sativa40.8726.8687.38206forward
CNT30331117Triticum turgidumDioscorea rotundata60.7132.3179.41306forward
CNT30147953Triticum turgidumBrachypodium distachyon61.5135.6794.52310forward

Expression of CNT30394717

Peptides detected in this lncRNA

>peptide 1 (60 aa)
MSPEMRFTPPRRARRRIAGLVMPWMLSRSTFRWRLAPPLPSPFPPLPRPDIFSLLSASPR*

>peptide 2 (55 aa)
FKDKLVRFPFNSILQKIANNSEILRLHQRPRTLDTLIWRRWWPSLRIRRGCVPGA*

Sequence

>CNT30394717
TTTCAAGGATAAACTAGTTCGATTTCCATTCAATTCCATTCTACAGAAGATAGCAAACAACAGCGAGATACTGCGATTACATCAAAGACCACGAACCCTA
GACACTCTAATCTGGCGGCGGTGGTGGCCTAGCCTCCGAATCCGTAGAGGGTGCGTCCCTGGCGCTTGAGGGCGTAGACGACGTCCATGGCGGTGACGGT
CTTGCGGCGGGCGTGCTCGGTGTAGGTGACGGCGTCGCGGATGACGTTCTCGAGGAAGATCTTGAGCACGCCGCGGGTCTCCTCGTAGATGAGCCCCGAG
ATGCGCTTCACGCCGCCCCGCCGCGCCAGACGACGGATCGCCGGCTTGGTGATGCCCTGGATGTTGTCCCGGAGCACCTTCCGGTGGCGCTTGGCCCCGC
CCTTGCCGAGCCCCTTTCCTCCCTTACCGCGCCCCGACATCTTCTCCCTTCTCTCTGCTTCTCCTCGGTGAGGTTGACTTGTCTTTGGGAGGTGGCTGCT
GCGG