« Back to Triticum turgidum search


Detailed information on CNT30394052


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9AR14|PIP15_MAIZE, E-value = 3e-108

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691492Triticum turgidumOryza sativa30.3357.1886.41434forward
CNT30546615Triticum turgidumIpomoea triloba3.9120.8291.0756forward
CNT30615812Triticum turgidumSesamum indicum4.3329.1187.162forward
CNT3019525Triticum turgidumCitrullus lanatus4.8231.5186.9669forward
CNT30163276Triticum turgidumPistacia vera6.2228.983.1589forward
CNT30297885Triticum turgidumTriticum aestivum35.1580.61100503forward
CNT30224542Triticum turgidumHordeum vulgare26.9751.2691.71386forward
CNT30564991Triticum turgidumActinidia chinensis10.0635.6486.11144forward
CNT30590722Triticum turgidumMusa acuminata13.2142.9582.01189forward
CNT3084566Triticum turgidumVigna radiata8.5320.7189.34122forward
CNT30599410Triticum turgidumFraxinus excelsior12.512779.89179forward
CNT30465879Triticum turgidumSaccharum spontaneum14.4721.6888.41207forward
CNT308418Triticum turgidumZea mays3.2821.1791.4947forward
CNT30232947Triticum turgidumAnanas comosus13.2179.7583.07189forward
CNT30595794Triticum turgidumOryza meridionalis15.72102.7484.89225forward
CNT30325169Triticum turgidumAsparagus officinalis8.3945.2884.17120forward
CNT3038712Triticum turgidumCucumis melo4.8223.5585.5169forward
CNT30116468Triticum turgidumOryza nivara20.7541.8386.2297forward
CNT30603734Triticum turgidumOryza punctata27.5330.0188.83394forward
CNT3050457Triticum turgidumCucumis sativus12.330.6183.52176forward

Expression of CNT30394052

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MPPKLQAMPWMPTVPHLEPEGLPTTPITVSTLMYRNRKVARNSAIPAR*

>peptide 2 (49 aa)
MFHALVREAGALTGTWESLALRLASVAEKTVYTSTKVPTISAPRHCITM*

>peptide 3 (31 aa)
MAASAAPVNGPTQKIHCMPKTMIIKLNSSQA*

>peptide 4 (43 aa)
MLAAALEGDGPDHHHVVDGRQRRAGERAHPEDPLHAQNHDHQA*

>peptide 5 (59 aa)
MMAAPRERAGLMPVPVMGIVARCTRNTANPIGSGARICTESIHTSVNLFIIHEMICSTR*

Sequence

>CNT30394052
TTTTTGTAAAGTTAGTCAAACTTAAACAAGTTTGACTTAGTACAAACCCAGAAATCCCAAATGTTTTGGAACGGAACAAGTATCGATGTAATAGCACTCC
AGTTGAAGATCGATCGTTAATTCGATCTTCATTCCTTGTTATTTTATACACGCATTTTGCTTACAAAAGAGAGGGAACCACAAGTACCGAAATTTGCACA
TTTTGGGTAGGCGCGGTGAAGAAGTGCACCACACTTGTAACGCTGACACACCGACTGAAGGACACACACGCTCGCTCGCTCAGGAACAGTACGGCAGACC
GATAGTTACAGGAGTACTCACGCAGGAGCAACGATCAGCACAAACGATGGTCGATGAACGATAGGATTCCATCCGTTCCATGGCCGATTGAGTATGCTAG
CCGCGGCTCTTGAAGGGGATGGCCCTGATCACCACCACGTGGTAGATGGCCGCCAGCGCCGCGCCGGTGAACGGGCCCACCCAGAAGATCCACTGCATGC
CCAAAACCATGATCATCAAGCTTAATTCCTCCCAAGCATGAATAATTAGTCTCTAAGTAGTGACTGATAGTCCTAGTTTTGTTAGTTAAGTGATTCTTCT
TACGTGGTCGTCCCACGACTGCTTCTTGTTGTAGATGATGGCGGCGCCGAGGGAGCGCGCCGGGTTGATGCCGGTGCCGGTGATGGGGATCGTCGCCAGG
TGCACCAGGAACACCGCGAACCCGATCGGCAGCGGCGCCAGGATCTGCACCGAATCCATCCATACATCAGTTAATTTGTTCATCATCCACGAAATGATAT
GTTCCACGCGCTAGTTAGAGAGGCCGGTGCACTTACGGGGACGTGGGAGTCTCTGGCGCTGCGCTTGGCGTCGGTGGCGGAGAAGACGGTGTACACGAGC
ACGAAGGTCCCCACGATCTCCGCCCCCAGGCACTGCATCACCATGTAGAACACGGCCCGGGTGAGCGACAGCTTCCTGGCCAGGAACAGCCCGAAGGTGA
CGGCGGGGTTGATGTGGCCGCCGGAGATGCCGGCGGTGCAGTAGACGAGCACGAAGATCATGCCGCCGAAGCTCCAGGCGATGCCCTGGATGCCCACGGT
GCCGCACTTGGAGCCGGAGGGGTTGCCCACCACGCCCATCACCGTGAGCACGCTGATGTACAGGAACAGGAAGGTGGCCAGGAACTCGGCGATCCCCGCG
CGGTAGAAGGACCACGACGTCAGCTCCTCCGCCTCGAACAGCGGCGCCGGCGGCGGCTCCTTGTAGTCCTTGTCGTCCGCGCCCTGCGCTGCCGTTCCGA
TCGGCTGCCGCTCCGAGTACCGGTTGGCGCCCAGACGCACGTCCTCCTCCTTGCCCTCCATTGCCGCTGCTTGAGCTCAGCTGCTTAGCCTGTTAGGCAG
AGGAGATGAGATGATGATGGATGGGTGTGCG