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Detailed information on CNT30393350


BLAST search results

BLAST vs Swiss-Prot:
sp|Q2QVG9|CLPC2_ORYSJ, E-value = 4e-151

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693027Triticum turgidumOryza sativa34.3738.2279.94344forward
CNT30672972Triticum turgidumSetaria viridis17.2876.8988.44173forward
CNT30272384Triticum turgidumChenopodium quinoa40.9638.3582.68410forward
CNT30404760Triticum turgidumBeta vulgaris38.5644.4280.57386forward
CNT30709232Triticum turgidumGlycine max32.1743.1685.09322forward
CNT30300179Triticum turgidumTriticum aestivum60.8452.1998.52609forward
CNT30144776Triticum turgidumMedicago truncatula22.3817.0682.59224forward
CNT30441093Triticum turgidumAegilops tauschii23.0845.4799.13231forward
CNT30254596Triticum turgidumAvena sativa23.2817.5780.69233forward
CNT30658759Triticum turgidumTriticum dicoccoides24.2841.0581.48243forward
CNT30311914Triticum turgidumCamelina sativa31.9751.7880.94320forward
CNT3062430Triticum turgidumArabidopsis lyrata37.9632.9679.21380forward
CNT3017684Triticum turgidumZea mays32.1778.1687.27322forward
CNT30717839Triticum turgidumMalus domestica golden12.1924.0286.89122forward
CNT30685178Triticum turgidumTriticum urartu46.5557.39100466forward
CNT3053264Triticum turgidumAmborella trichopoda20.8833.3984.21209forward
CNT30328300Triticum turgidumAsparagus officinalis13.9946.9881.43140forward
CNT3037990Triticum turgidumCucumis melo16.3855.0381.1164forward
CNT30150466Triticum turgidumBrachypodium distachyon14.5943.0782.19146forward
CNT30101573Triticum turgidumOryza rufipogon20.1823.8579.7202forward
CNT30116632Triticum turgidumOryza nivara22.9860.0582.61230forward

Expression of CNT30393350

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MHITVYFIHTVIELYTPDLTAAPMKRYVLEGNENAVLYIYA*

>peptide 2 (36 aa)
MLNTSGCAFSISSKSTTLYGRRRTASVSCPPSVYPT*

>peptide 3 (33 aa)
MAAVEPPPSAAHLQCIPHSLVVNRSTWTQCASP*

>peptide 4 (34 aa)
MCLLNLIKKHNAVWPPSNRLRQLPTFSVSHIAWW*

>peptide 5 (47 aa)
EKLEQESVSELLRSNALEWINQEPKPAMFPFPLNYICILLYILYIQL*

>peptide 6 (57 aa)
MSLVLSLVKTSCSIMSAISLTSSLVSCLKTIISSRRLRNSGRKYCFISSITKLLILP*

>peptide 7 (32 aa)
KNSSRNQCLNCSGAMHLSGSIKSQSQQCFLSP*

Sequence

>CNT30393350
GAAAAACTCGAGCAGGAATCAGTGTCTGAACTGCTCAGGAGCAATGCACTTGAGTGGATCAATCAAGAGCCAAAGCCAGCAATGTTTCCTTTCCCCTTAA
ATTATATATGCATATTACTGTATATTTTATACATACAGTTATAGAATTATATACACCTGACCTGACTGCCGCACCTATGAAGAGATATGTGCTGGAAGGA
AATGAAAACGCTGTATTGTATATATATGCTTAACAATCTTCTACGTATTCTATACAGTACCAACAACTAAACAGCGACCGCCGGGCGGCCGCGCTCCGTA
GCTAGGGTTGTACCCTTCGTCCACGACCCGCTCCTTGAACTTCTCCGTCACCTGCAGGTTGATGTCCTTGGTCTTGAGCCTGGTGAAAACCTCCTGCAGC
ATTATGTCCGCGATCTCTTTGACTTCCAGCTTGGTCAGCTGTCTGAAGACGATCATCTCGTCCAGACGGTTGAGAAACTCTGGTCGGAAGTACTGCTTCA
TCTCCTCGATCACCAAGCTCTTGATCCTGCCATAGCTGCTGTCCTTCTCGTCCGAGTCGAGGTCGAACCCGATCTTCCTCCCCCCCTTCTCAATCACGCT
GCTCCCAACATTTGATGTCATTATCAGGAGCGTGTTCTTGAAGTCCACTGTTCTCCCCTTGCTGTCGGTTAACCTTCCGTCTTCCAGGATCTGGAGCATC
ATGTTGAACACATCCGGATGTGCCTTCTCAATCTCATCAAAAAGCACAACGCTGTATGGCCGCCGTCGAACCGCCTCCGTCAGCTGCCCACCTTCAGTGT
ATCCCACATAGCCTGGTGGTGAACCGATCAACTTGGACACAGTGTGCCTCTCCATGAACTCACTCATATCCAGCCGGATCATGGCTTCTTCAGAGCCGAA
GTAATATGATGCCAGAGTCTTTGCAAGCTCTGATTTCCCAACACCAGTGGGACCTGCAAAAATGAAGCTCGCAATTGGTCTGTTGGGGCTCTTGAGGCCC
A