Detailed information on CNT30392832


BLAST search results

BLAST vs Swiss-Prot:
sp|Q10RZ1|BAMY2_ORYSJ, E-value = 9e-39

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522103Triticum turgidumSetaria italica38.2722.691.51106forward
CNT30651648Triticum turgidumRosa chinensis23.479.7986.1565forward

Expression of CNT30392832

Peptides detected in this lncRNA

>peptide 1 (46 aa)
HSGLLGGVGHLADERLGHALRVLRLLVVAHLDAGTRRGSWCCSSRR*

>peptide 2 (31 aa)
MPATLTETLTPGVPVKTEEHAESMRSPCSMSI

>peptide 3 (91 aa)
TPASLAALATWLTSASGMHCASCGCSWLRISTQVPVVVPGVVVAGGELGRVGAGAVVPVDAGHLDGDLDPGGTREDGGARGEYALAVLDEHL

Sequence

>CNT30392832
CACTCCGGCCTCCTTGGCGGCGTTGGCCACCTGGCTGACGAGCGCCTCGGGCATGCACTGCGCGTCCTGCGGTTGCTCGTGGTTGCGCATCTCGACGCAG
GTACCCGTCGTGGTTCCTGGTGTTGTAGTAGCCGGCGGTGAGCTCGGGCGCGTGGGAGCGGGTGCCGTAGTGCCAGTGGATGCCGGCCACCTTGACGGAG
ACCTTGACCCCGGGGGTACCCGTGAAGACGGAGGAGCACGCGGAGAGTATGCGCTCGCCGTGCTCGATGAGCATCTG