« Back to Triticum turgidum search


Detailed information on CNT30392054


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522578Triticum turgidumSetaria italica22.1116.0591.51212forward
CNT30186723Triticum turgidumSecale cereale20.7524.1595.98199forward
CNT30575667Triticum turgidumOryza barthii6.0520.7189.6658forward

Expression of CNT30392054

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MRCRCSPGRRGSGARRRGPCRPGSRRWCCPCRAPCGRGRRA*

>peptide 2 (66 aa)
MEASDAATTPKSPDRSNRSPYVSIPPSFGRYTPRRTRITTNHSSTYVCMHSLPPYKKISTASARVS*

>peptide 3 (69 aa)
MPWKLQTRQLLPSHPIDRIDPHMFPSHLRSVGTHHDVRGSQQIIVVRMYVCIVYHHIRRSLRRRRELVD*

Sequence

>CNT30392054
GAATGGAGGATAAGATCGTTTTGCAAGCCAAAACAACCTGCAAAATGATCTTATATTGACATTATGAGACGAAGAGAGTAGAAGATAGCAACAAATTAGT
GCTCGCCAAGCTCTGTTCTTGATTTCACTTTAGCGGAACAGATACAGCAAGGCTGTTACAACATTTTCAGAGTATCGATCTTACAGTGCAGCACTGCTAC
TGCGGTAGCTTAGTACGTAGTAGTACATCAGTCCCCTGCAAGCTTTGAGCTAGCGACGCCGAGACCGGCATCGCCATGCCATGGAAGCTTCAGACGCGGC
AACTACTCCCAAGTCACCCGATCGATCGAATCGATCCCCATATGTTTCCATCCCACCTTCGTTCGGTCGGTACACACCACGACGTACGCGGATCACAACA
AATCATAGTAGTACGTATGTATGTATGCATAGTTTACCACCATATAAGAAGATCTCTACGGCGTCGGCGAGAGTTAGTTGATTAGTTGCAGAGGGCGACG
GCGGCCTCCTGGACGACGCCCTGGGTGGCGTGGGCGACGCCCTGGGCCTCGCGCTCCACCTGCTCGCGGCTCACGTCCCTGACGCCGGTCTCCGTCATGC
GCTTGACGAAGGCGGCGAAGCGGCGCCAGTTGTCGGGCTGGAAGAGGTCGGGGCCCATGCGGAGGTAGGTGAAGGCGACCATGCGGTGCCGTTGCTCTCC
GGGTAGGAGGGGTAGCGGAGCTCGCCGGCGGGGCCCATGCCGACCTGGATCTCGCAGATGGTGTTGCCCATGTAGGGCGCCATGTGGTCGCGGAAGGCGC
GCATGAAGTCGGCGTAGCACTGGACGGGGCTGCGGCCCTTGAGCGCCGGGAGCGTGTCGGCGCCCAGCGAGATGTACTCGTAGTTCCGGCGGCCGCACCT
GTCCGTGTACGCCAGGTCCTGGTCCTTGTCCATCTCCTCCGTTACCCATTTCGGAAGTG