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Detailed information on CNT30391774


BLAST search results

BLAST vs Swiss-Prot:
sp|P08248|PLAS_HORVU, E-value = 9e-38

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30443574Triticum turgidumAegilops tauschii36.3839.2394.88215forward
CNT30141888Triticum turgidumLolium perenne22.8425.4296.3135forward
CNT3012376Triticum turgidumZea mays23.5224.3984.89139forward
CNT30370409Triticum turgidumOryza glumipatula23.6917.9792.14140forward
CNT30102318Triticum turgidumOryza rufipogon23.6922.5892.14140forward
CNT30583031Triticum turgidumEchinochloa crusgalli23.5216.0588.49139forward
CNT30557443Triticum turgidumPanicum hallii23.5220.8788.49139forward

Expression of CNT30391774

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MIKSLISSYSSRKHIHIAYVGTINQYACMTRPV*

>peptide 2 (88 aa)
MVSPALTLKSLGSNTSTPPLAPRSTSCAIADPPSSIALAAMATAALAAFLPSDARTTILLLLLRMGVAAKEGTDTAAEERAAMAAAAS*

Sequence

>CNT30391774
TTATGATCAAGAGCCTCATCTCATCTTATAGTAGTAGAAAACATATACATATAGCGTACGTTGGTACAATTAATCAATATGCATGCATGACACGTCCGGT
CTGACCCATCAACAATGAACCCAAACTCGCAAGAACAGCGATATGGAGCTAGCTTAATTAGTTGACGGTGACCTTTCCGACCATGCCGGCCCCGGCGTGC
GGCTCGCAGTAGAAGCCGTAGGGCACGGCGTCCTCGTCGAACACCACGTTGTGCGGGTACCCGGCGTTGTTCTTGAAGGTGATGGTCTCGCCGGCCTTGA
CGCTGAAGTCGTTGGGCTCGAACACCAGCACGCCGCCGTTGGCGCCCAGGAGCACGTCCTGCGCCATCGCCGACCCGCCCAGCAGCATCGCGCTCGCGGC
CATGGCCACGGCCGCGCTGGCGGCCTTCTTGCCCAGCGACGCGCGCACCACCATCCTGCTGCTGCTGCTGCGCATGGGGGTGGCGGCGAAGGAAGGGACG
GACACCGCTGCAGAGGAGAGAGCGGCCATGGCTGCTGCTGCTAGCTAGCAAGTGGGAGTGGTTGGCTGGGAAAGAGTACGTACGTAGATAG