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Detailed information on CNT30386863


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SH66|DIR5_ARATH, E-value = 9e-48

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694742Triticum turgidumOryza sativa31.6126.6382.98282forward
CNT30308915Triticum turgidumTriticum aestivum31.8457.4986.27284forward
CNT30243125Triticum turgidumAvena sativa31.527.0784.34281forward
CNT30102405Triticum turgidumOryza rufipogon31.6141.3582.98282forward
CNT30577067Triticum turgidumOryza barthii23.7722.8984.91212forward

Expression of CNT30386863

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MPLGLALSSLQLSLSLIKLQLAEVRYRVSSS*

>peptide 2 (58 aa)
MVAMPRAMKKSPVPPTTERSRVSSSMRSAPMRLRVPLYALESNTREKVNHALYDSFLS*

>peptide 3 (31 aa)
MRCTILSCRRSRNPARAPPAPRPRPVALSPP*

>peptide 4 (39 aa)
MAQNSHAHACNSSHKEKQQHQHHSLILIGTRVRAIYKPS*

Sequence

>CNT30386863
AAATTGTCAAAAGAAAAGTATCGACCATGTAAATGTATAAATAGATTTTCCATAAATAAGCAGAATAAAACATCATACGATTAAAACTCTTGTGGGCGTG
AAACATACAGGAATGGCACAAAATTCACATGCCCATGCATGCAACTCATCACACAAAGAAAAACAACAGCACCAACATCACTCCTTGATCCTTATCGGCA
CACGCGTGCGTGCGATTTATAAACCATCTTGATAACTTATCAGATGAGAAGTAGCACTCGTAGAGCTTGATGTCCATCTTGAGGTGGAAGTAGAAGTAGC
CCTCGGTGGCGTCGGTGCGGATGGTGGCGATGCCGCGCGCCATGAAGAAGTCACCGGTGCCGCCGACGACGGAGAGGTCGCGCGTCTCGTCGTCCATGAG
GTCGGCGCCCATGAGGTTGAGGGTGCCCTTGTACGCCTTGGAGTCGAACACGAGGGAGAAGGTGAACCATGCGTTGTACGATTCTTTCTTGTCGTAGAAG
TAGAAACCCTGCGCGCGCGCCGCCGGCTCCTCGTCCCCGACCGGTAGCGCTGTCCCCTCCTTGACCAGGTCGTCGAACACCACCAGCATGCCGAAGAAGG
TGCCGTTGCTCCAGATGTCGTGGAGGTAGAGCGTCATCTGCTTGCACGGCTCGTCGGAGCTGCTGGAGACGAGCCTCCTCCGGCTACTGTCGGCGGCTGC
CCCCGCCAAGTCCAAGGCGAGCAGGAACATCACGAGCACCTCTTGGAAGATGCCGCTGGGGCTTGCATTGTCGTCATTGCAACTCTCGCTGAGCTTAATT
AAGCTGCAGCTGGCTGAAGTGCGGTATCGAGTGAGCAGCTCGTGACCTTGTGTTCTTGGGACGATCGGTGTTCTTGTTGCTGTTGTGTTGAG