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Detailed information on CNT30386567


BLAST search results

BLAST vs Swiss-Prot:
sp|Q05855|PER1_WHEAT, E-value = 5e-62

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694715Triticum turgidumOryza sativa26.699.5784.2195forward
CNT30672255Triticum turgidumSetaria viridis33.7128.4487.5120forward
CNT30221499Triticum turgidumHordeum vulgare33.7141.2493.33120forward
CNT30596630Triticum turgidumOryza meridionalis26.412.2486.1794forward
CNT30370682Triticum turgidumOryza glumipatula27.251287.6397forward
CNT30102748Triticum turgidumOryza rufipogon27.2512.6885.5797forward
CNT30577207Triticum turgidumOryza barthii27.2511.187.6397forward
CNT30117253Triticum turgidumOryza nivara30.914.7386.36110forward
CNT30604331Triticum turgidumOryza punctata27.2514.0886.697forward

Expression of CNT30386567

Peptides detected in this lncRNA

>peptide 1 (39 aa)
EVGVVGAAEGRRVGRKVADSVVGGVVVEEHLVRVQEPFL*

>peptide 2 (36 aa)
MVCAPESATMSTVLRFFLRNAASSCDRLELGPGRSLF

Sequence

>CNT30386567
GAGGTTGGTGTAGTAGGCGCTGCTGAAGGCCGCCGCGTTGGACGCAAAGTTGCGGACAGTGTTGTCGGTGGTGTCGTTGTTGAAGAGCACCTGGTCCGAG
TGCAGGAGCCCTTTCTGTGACAGGAGGTTGGTGTTGCCGCCGGACTGGGGGCAGTTGGCCTTGAGAGACGTCGCGAAGGCAGTGTTGATGTTGGTGTCAC
CGCCATAGATCCGAGTCCGGAAGTTGGAGCACTGGGCCTTCCCGATGGTGTGCGCGCCTGAGAGCGCGACCATGTCGACCGTGTTAAGGTTCTTCTTGAG
GAACGCGGCCTCGAGCTGTGACCGGCTAGAGCTCGGGCCAGGGAGGTCACTGTTCG