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Detailed information on CNT30386340


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SW70|SRP_VITRI, E-value = 2e-37

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30520677Triticum turgidumSetaria italica16.7527.5488.12160forward
CNT30286948Triticum turgidumTriticum aestivum62.8378.43100600forward
CNT30221689Triticum turgidumHordeum vulgare39.976.285.83381forward
CNT30658060Triticum turgidumTriticum dicoccoides78.01100100745forward
CNT30680115Triticum turgidumTriticum urartu99.6997.2498.53952forward
CNT30596560Triticum turgidumOryza meridionalis21.0528.7686.07201forward
CNT30577004Triticum turgidumOryza barthii21.0533.7886.07201forward
CNT30556599Triticum turgidumPanicum hallii12.042389.57115forward

Expression of CNT30386340

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MRSMGMPGRNRAPGNPRPAANEITLLYFSHQ*

>peptide 2 (35 aa)
KGRSQLHWIKSTKATSSNFLYKSTENIRDAHHTKA*

>peptide 3 (40 aa)
MPYTSLATPFTPDRLAPSAISLASSGTAWTAWDACADADFT

>peptide 4 (37 aa)
KDEANCIGSSRRRRHQATFCTKARRTLETRTTQKHSS*

Sequence

>CNT30386340
AAAAGGACGAAGCCAATTGCATTGGATCAAGTCGACGAAGGCGACATCAAGCAACTTTTTGTACAAAAGCACGGAGAACATTAGAGACGCGCACCACACA
AAAGCATAGTAGCTAGTACAACATCATTATCATTAGCATCACCCGTGAGCACGTATCTAGGACGGTAAACCCAGGATGCCAGTATCTTCTTAGCCCTGGG
TCCACATTATCTTATTCAGTTCCGGCCAAGGGCGACATACCTCGTCCACCAGGGCATGATAGCGGCACGGCGGCACACCTAGGCCTGGGCCCCAAGATCC
ATAGGCTTGGCCGCCTCCGGCTGGCTCTCCCCGGCGGTCTGGGCGTCAGATTCCACAGGCTTGGCATCCGGCGAGCTCTCCTCCCCGGTCTGCGCATCAG
GTCCCACAGCCTTGGCATCGGGCGAACGCTCCTCGGAGGAGGTCTGGGCATCCAGTCCCATAGGCTTGGCATCGGACGAGCGCTCCTCGGAGGTCTGGGC
ATCAAGTCCCGTCGGCTTGGCATCCGGCGAGCGCTCCCCGGCCGAGTTCGTCCCGAACGCCTTGGCGATGCGCTCGATGGGGATGCCGGGGAGGAACCGT
GCGCCGGGGAACCCCCGCCCGGCCGCGAACGAGATCACCCTGTTGTACTTCTCGCACCAGTAGGCGGCGGTGGGCACGACGATGTGCGCCACCTGCGGGA
ACACCGGCAGCCCGTTGAGCGAGCGCCAGGCGGAGACGGCGAGGTGCTCGGCCGCCGGCTCGTAGCGCGCGTACAGGTCCTTGGCCACCGGCTCGCAGCG
CACGTAGAGGTCCTTGGCCACCGGCTGGACCATGCCGTACACGTCCTTGGCCACGCCCTTCACGCCGGACCGCCTCGCCCCGTCGGCGATCTCCCTGGCC
AGCTCCGGCACGGCGTGGACCGCGTGGGACGCCTGCGCCGACGCGGACTTCACCG