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Detailed information on CNT30385644


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9XFT3|PSBQ1_ARATH, E-value = 4e-34

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694735Triticum turgidumOryza sativa20.3620.0893.71159forward
CNT30671430Triticum turgidumSetaria viridis12.1637.794.7495forward
CNT30520717Triticum turgidumSetaria italica22.2823.8489.66174forward
CNT30179895Triticum turgidumSecale cereale22.9267.2998.32179forward
CNT30287666Triticum turgidumTriticum aestivum49.4265.7699.74386forward
CNT30554363Triticum turgidumOryza glaberrima31.2410.1687.7244forward
CNT30659718Triticum turgidumTriticum dicoccoides39.184594.44306forward
CNT30453977Triticum turgidumSaccharum spontaneum25.8668.2488.12202forward
CNT304156Triticum turgidumZea mays25.4849.2687.94199forward
CNT30680164Triticum turgidumTriticum urartu82.9799.5498.15648forward
CNT30351417Triticum turgidumEragrostis tef15.1154.8891.53118forward
CNT30362913Triticum turgidumSorghum bicolor21.516086.31168forward
CNT30370617Triticum turgidumOryza glumipatula27.0276.7392.42211forward
CNT30148624Triticum turgidumBrachypodium distachyon26.549.2995.17207forward
CNT30581445Triticum turgidumEchinochloa crusgalli25.8629.1991.09202forward
CNT30496557Triticum turgidumDigitaria exilis23.9479.5789.3187forward
CNT30117138Triticum turgidumOryza nivara24.5815.9693.75192forward

Expression of CNT30385644

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MEKLTPVSPAILLEKMFRFDAVRIKMAMFLKRHKVIAEIARW*

>peptide 2 (33 aa)
MFTLHMTESQDRIILKCLLTYYQQGSYIAGFQI*

>peptide 3 (36 aa)
MTYGHCFLSMSGLRLRMSWADSLARTAASAGGSGCR*

Sequence

>CNT30385644
GGAATTAATATTAATAACTAAAAAAGCAAAAGAAGATTTGGATGAATTATTCGGTTGGACTAAACTGTGTACTCGTGGCTGTTGAGCTCTAACTGCAAGT
TACTATTCGTTGTTACATCGGATTTGTGCGCAGTTTGTCTTAATGTTTACTCTTCATATGACTGAATCTCAAGATAGAATCATACTTAAGTGCTTGTTGA
CATATTATCAACAGGGAAGTTACATTGCCGGCTTCCAAATATGAACAAACATAAAAGGCCTGAAAGCAACACGGCCATTATGCCGATCCATCTAGCCTAG
CTTGGCGAGGACATCGCCGAGAACAGTCTTGGTCTCGCCGTAGTACTTCTCGGCCTCGGTGGGGCTCTTGATCTTGGCTGCATGGTCAAGCTGCAAACAA
AATGGAGAAGCTCACACCTGTTAGTCCTGCAATTCTTCTTGAGAAAATGTTCAGGTTTGATGCAGTAAGAATTAAGATGGCCATGTTTCTGAAGAGACAT
AAGGTAATAGCTGAAATTGCGAGATGGTAGGTTTCTTACCCCGTCGAGGGTGGCGAAGAGCTTGCCGGTGAGGTCGTAGCGCAGGTAGGAGGCCCTGAGG
CGGAGGTCGTTCATGACGTACGGCCATTGCTTCTTGTCGATGAGCGGCTTGAGGTTGAGGATGTCCTGGGCCGACTCCTTGGCCCGCACCGCCGCCTCCG
CCGGTGGCAGCGGCTGCAGGTAGAACCGGTTCTTCAGGGGCAGGTCGAAGTCCCTTGCCTCGTCCGAGTTGTCCGTTCCGG