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Detailed information on CNT30384863


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673796Triticum turgidumSetaria viridis11.250.2291.23114reverse complement
CNT30188207Triticum turgidumSecale cereale24.6633.7487.65251forward
CNT30284885Triticum turgidumTriticum aestivum88.4195.9599.44900forward
CNT30221693Triticum turgidumHordeum vulgare2213.9488.39224forward
CNT30439821Triticum turgidumAegilops tauschii23.9720.1592.21244forward
CNT30254428Triticum turgidumAvena sativa11.221.2391.23114reverse complement
CNT30659707Triticum turgidumTriticum dicoccoides75.2598.9798.96766forward
CNT3060118Triticum turgidumArabidopsis lyrata10.2235.3782.69104reverse complement
CNT30685269Triticum turgidumTriticum urartu20.5328.8396.17209reverse complement
CNT30368840Triticum turgidumSorghum bicolor10.3129.2590.48105reverse complement
CNT30370517Triticum turgidumOryza glumipatula11.122.6590.27113reverse complement
CNT30705068Triticum turgidumPrunus avium1125.9983.04112reverse complement

Expression of CNT30384863

Peptides detected in this lncRNA

>peptide 1 (30 aa)
SIYPLLLCVFSSRISVLYLYVYMLNDRSSR*

>peptide 2 (29 aa)
MSDIYYLPAVVSYCLLFYIRSTMKRIGGG*

>peptide 3 (53 aa)
MHVCMLVLLSLQSILLLLSYPGCFVAINICPMFCFLACLLLQSILLFCQMFTC*

>peptide 4 (50 aa)
MRLTFTSFFPSQTRRRPYARHQGAWCSQATNGGCSTSATQTTIELQVYGI*

>peptide 5 (43 aa)
MTEAQGEEGHREGQRRWRPDICRERHPQVHRAHELPPPRPIRP*

>peptide 6 (58 aa)
MRCMFACLCFCHYNLYYCYCHILVVLLLSISVPCFVSLHAYYYNLYYYSARCSHVNFC*

>peptide 7 (56 aa)
MQGTKVHGARKRRTEAVRHRLHKPPLSSRSMEFEVRSCIALLSKELSLCLTVIDCK*

Sequence

>CNT30384863
GTCCATTTATCCTTTATTGCTTTGTGTTTTCTCTTCTAGAATTAGTGTACTTTACTTATATGTTTATATGTTGAATGACAGAAGCTCAAGGTGAAGAAGG
CCATCGAGAAGGGCAACGCCGATGGCGCCCAGATATATGCCGAGAACGCCATCCGCAAGTGCACCGAGCACATGAACTACCTCCGCCTCGCCCTATACGC
CCATGAGTGATATATACTACTTGCCTGCTGTTGTATCATATTGCTTACTTTTTTACATCAGATCAACTATGAAGAGAATTGGTGGTGGTTAGGGTGTTCT
GGTGCTTATGTAATCTTCTTTCAGGCCTTTCGAGATAGAGTTCTTTAGCTGACAAGTTTAGCAAATGTTGTAGTGCTTATGGTTTAGTTTTACACTTGCG
TAAAAATGAATGGCTGCTACTGTTTCTAGTTTTAGGTTGGGATGAGATGCATGTTTGCATGCTTGTGCTTCTGTCACTACAATCTATACTACTGCTATTG
TCATATCCTGGTTGTTTTGTTGCTATCAATATCTGTCCCATGTTTTGTTTCCTTGCATGCTTACTACTACAATCTATACTACTATTCTGCCAGATGTTCA
CATGTTAATTTTTGTTGACTAAAATCTCTTATGCCGTTGACTTAGCTTGACCCAGAACAGCAGCATCCTTGATGCGACTAACCTTCACCTCGTTCTTTCC
CTCGCAGACTCGAAGGAGGCCGTATGCAAGGCACCAAGGTGCATGGTGCTCGCAAGCGACGAACGGAGGCTGTTCGACATCGGCTACACAAACCACCATT
GAGCTCCAGGTCTATGGAATTTGAAGTTCGAAGCTGTATAGCCCTACTCAGCAAAGAGTTGTCTCTATGTTTGACTGTAATAGACTGTAAATAATGTAAT
ATTGTAACAGTAGGCATATTGGGGTTGTAATAGACTATCTACAGATTGTAGTAGACGTAGTGTTACTTGATGAACAATCTGATGAGTGAGAACAATTTAA
GATGCACCTTTGTAATAT