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Detailed information on CNT30384857


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FYE4|CML50_ARATH, E-value = 4e-06

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696621Triticum turgidumOryza sativa22.649.9988.5496forward
CNT30677535Triticum turgidumSetaria viridis34.269.3883.45145forward
CNT30283765Triticum turgidumTriticum aestivum45.5243.1894.3193forward
CNT30435716Triticum turgidumAegilops tauschii76.1842.1796.9323forward
CNT30239672Triticum turgidumAvena sativa51.4229.987.16218forward
CNT30679142Triticum turgidumTriticum urartu76.1831.6794.12323forward
CNT30361318Triticum turgidumSorghum bicolor22.6415.8984.3896forward
CNT30596940Triticum turgidumOryza meridionalis24.0624.0688.24102forward
CNT30149646Triticum turgidumBrachypodium distachyon42.2233.3385.47179forward
CNT30103572Triticum turgidumOryza rufipogon22.649.0188.5496forward
CNT30577940Triticum turgidumOryza barthii22.6411.8588.5496forward
CNT30498664Triticum turgidumDigitaria exilis36.7920.4581.41156forward

Expression of CNT30384857

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MGFIVWSAIWCIVGRSPIWCVVGRSPIWCVVGRSSIWWIIGWSPI*

>peptide 2 (67 aa)
MVHRWQVSHMVCRWQVSHMVCRWQVFHMVDHWLVSHIVDHWLVFHIVNHWQAHMVDQWQAAFDTGNH*

Sequence

>CNT30384857
CTTTTAGAGAAGTAATCTACTGAATCATGGGGTTTATTGTTTGGTCTGCCATATGGTGCATCGTTGGCAGGTCTCCCATATGGTGTGTCGTTGGCAGGTC
TCCCATATGGTGTGTCGTTGGCAGGTCTTCCATATGGTGGATCATTGGCTGGTCTCCCATATAGTGGATCATTGGCTGGTCTTCCATATAGTGAATCACT
GGCAAGCCCATATGGTTGATCAATGGCAAGCCGCCTTTGATACGGGGAATCATTAGCAGGCCTTCCATAAGGGGTATCATTGGCAGGCCTTCCATAAGGG
GTATCATTGGCAGGCCTTCCATAAGGGGCATCATTGGCAAGCCTTCCATATGGTGGATTAGCAGGTCTTCCGTACAGTGTGAATTCCCTGCTAGGAAATA
TATCAGCAGGAGGACCATCAAAAG