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Detailed information on CNT30382961


BLAST search results

BLAST vs Swiss-Prot:
sp|P37834|PER1_ORYSJ, E-value = 1e-104

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673552Triticum turgidumSetaria viridis12.5932.8686.9669forward
CNT30177667Triticum turgidumSecale cereale44.8999.698.78246forward
CNT30286373Triticum turgidumTriticum aestivum79.3810098.16435forward
CNT30435520Triticum turgidumAegilops tauschii70.0794.8197.92384forward
CNT30240010Triticum turgidumAvena sativa49.8298.5689.01273forward
CNT3011240Triticum turgidumZea mays35.0479.6782.81192forward
CNT30149367Triticum turgidumBrachypodium distachyon30.2942.1389.16166forward
CNT30116828Triticum turgidumOryza nivara35.5832.4585.13195forward

Expression of CNT30382961

Peptides detected in this lncRNA

>peptide 1 (34 aa)
WLPVSGLALPILIMEAAESAKNSSLNAPVAWRWT*

>peptide 2 (57 aa)
MVCPADKTTRSFASRFTAAKSWVSTVKLEVGGGRASVSLEMDTLPSRRPRGTVQNGPL

>peptide 3 (88 aa)
LASGERVGVAHLDHGGGGVGEELVLECSGGMALDVGAGEGVGEEGAVGVEEAPPLAHQLEVIGVEGLEAAGVHLHECGVVVEAGTLAL*

Sequence

>CNT30382961
CTGGCTTCCGGTGAGCGGGTTGGCGTTGCCCATCTTGATCATGGAGGCGGCGGAGTCGGCGAAGAACTCGTCCTTGAATGCTCCGGTGGCATGGCGCTGG
ACGTAGGCGCGGGTGAAGGGGTCGGTGAGGAGGGCGCCGTCGGAGTGGAAGAGGCCCCTCCGCTTGCTCACCAGCTTGAAGTAATCGGTGTCGAAGGTCT
TGAAGCTGCCGGGGTCCATCTCCACGAGTGTGGTGTTGTCGTTGAGGCTGGCACACTTGCTCTTTAGCCGCATCATGTACTGCGGCTCCAGCGTGGGGTC
AATGTCGCTGGGGTTCTCCATGCCGGTGAAGTTGTAGAGCCGGTCGGAGAAGGAGAAGCAGTGCGACGTCCCGATGGTGTGCCCGGCGGACAAGACGACA
AGGTCCTTTGCGTCGAGGTTCACGGCGGCGAAGAGCTGGGTGAGCACGGTGAAGTTGGAGGTCGGGGGTGGCAGAGCGTCGGTCTCGTTGGAAATGGACA
CGCTGCCGTCTCGCCGGCCGAGAGGAACTGTCCAGAATGGACCCTTGC