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Detailed information on CNT30382783


BLAST search results

BLAST vs Swiss-Prot:
sp|Q76H85|H4_SILLA, E-value = 4e-52

BLAST vs NONCODE:
NONGMAT001327, E-value = 7e-43

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30375418Triticum turgidumArabidopsis thaliana15.3836.4486.0586forward
CNT30178595Triticum turgidumSecale cereale85.5180.293.1478forward
CNT30286397Triticum turgidumTriticum aestivum98.2187.4294.35549forward
CNT3086297Triticum turgidumVigna radiata55.9926.9183.39313forward
CNT30435210Triticum turgidumAegilops tauschii99.2887.494.95555forward
CNT30252403Triticum turgidumAvena sativa55.144.8395.45308forward
CNT30655816Triticum turgidumTriticum dicoccoides98.2186.32100549forward
CNT30261175Triticum turgidumBrassica rapa3946.1979.82218forward
CNT30471244Triticum turgidumSaccharum spontaneum56.8933.2395.28318forward
CNT30135649Triticum turgidumLolium perenne56.1761.2195.86314forward
CNT30679687Triticum turgidumTriticum urartu69.2363.9798.19387forward
CNT30720165Triticum turgidumTriticum spelta25.5830.4992.31143forward
CNT30348363Triticum turgidumEragrostis tef55.4655.6695.48310forward

Expression of CNT30382783

Peptides detected in this lncRNA

>peptide 1 (73 aa)
MRPEMRLTPPLRASLRIAGLVMPWMLSRSTFRWRLAPPLPSPLPPLPRPDMADGLSLVRAASECGIGGAVVVVL

>peptide 2 (35 aa)
NHKQFICTKTSTISKLQMRIALFHDSLGTTGEIAN*

Sequence

>CNT30382783
AAAATCACAAACAGTTTATTTGCACAAAGACAAGTACAATTTCCAAACTCCAGATGCGAATAGCTTTGTTTCATGATTCACTTGGAACTACAGGGGAAAT
AGCGAACTAAACAAGTCAGGTTCTCATCGAGCTTTAGGAATCTGCAGGGGGGCAACGAAGACGACCACGAGGGGCCTATCCGCCGAAGCCGTAGAGGGTG
CGGCCCTGGCGCTTGAGCGCGTAGACGACGTCCATGGCGGTGACGGTCTTGCGGCGTGCGTGCTCGGTGTAGGTGACGGCGTCGCGGATGACGTTCTCGA
GGAAGATCTTGAGCACGCCGCGGGTCTCCTCGTAGATGAGGCCGGAGATGCGCTTGACGCCGCCCCTCCGAGCGAGCCTCCGGATCGCCGGCTTGGTGAT
GCCTTGGATGTTGTCGCGCAGCACCTTCCGGTGGCGCTTGGCGCCGCCCTTGCCGAGCCCCTTGCCTCCCTTGCCGCGCCCGGACATGGCTGACGGTCTC
TCCTTGGTTCGAGCTGCGAGCGAATGTGGGATTGGAGGAGCGGTGGTGGTTGTTTTGTG