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Detailed information on CNT30382729


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30553645Triticum turgidumOryza glaberrima25.3513.5881.48162reverse complement
CNT30240279Triticum turgidumAvena sativa23.9412.692.81153forward
CNT30474047Triticum turgidumSaccharum spontaneum23.1627.2185.14148reverse complement
CNT30352118Triticum turgidumEragrostis tef2322.6986.39147forward
CNT30367860Triticum turgidumSorghum bicolor23.1612.1986.49148reverse complement
CNT30370349Triticum turgidumOryza glumipatula25.3510.4481.48162reverse complement
CNT30101746Triticum turgidumOryza rufipogon25.215.181.37161reverse complement
CNT30576374Triticum turgidumOryza barthii25.358.5981.48162forward
CNT30116844Triticum turgidumOryza nivara25.3512.1881.48162reverse complement

Expression of CNT30382729

Peptides detected in this lncRNA

>peptide 1 (34 aa)
DAPTNWPHPRRSWPWWYKKERNVPLLGSEPHFFV*

>peptide 2 (49 aa)
MGKVCCSSESEEEAGFSFLGLLVAAVIALVFMLLCTPPKRRSVTIYPCC*

Sequence

>CNT30382729
TGACGCCCCAACAAACTGGCCACACCCACGGCGATCATGGCCGTGGTGGTATAAGAAAGAACGAAACGTACCACTGCTAGGAAGCGAGCCTCACTTCTTC
GTCTGACCACCACTGACCTCCAGCGTAGGCAGCACCGGGAAGCAACCTCTCTGCTCAGGCTAGCATGGGGAAGGTGTGCTGCAGCAGCGAGTCGGAGGAG
GAGGCGGGGTTCAGCTTCCTGGGGCTCCTCGTCGCGGCCGTCATCGCCCTGGTGTTCATGCTCCTCTGCACCCCGCCGAAGCGGCGCTCCGTCACCATCT
ACCCGTGCTGTTGAGGCTGAGGAGTCTCCAAGGATCTCTGGTTGCTGGGAGGAAGGTTATTCGGTTGTTCATGGGAGAGAGCAGGCCAGGCAATGGTCCC
TGGTTTTCTTCGGTTCAGAAAATAATTTCTACTACTGAATTGTAGGGCTCGTCGAAACTGGTTTCGAAATAAAGGAAAATCAAACGGAGCCAAAAACCTA
ATTCCACCGCTGCAACTTTCTACATCCACGAGATCCCATCTTGGGGCCTGTTCCGGAGCTCCGCCGGAGGGGGCATCGATCACGGGGGGCTTCTACATCA
TCATCCAAGCCCCTCCGATGAAGTGTGAGTAGTTTACTT