Detailed information on CNT30381317


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30401950Manihot esculentaBeta vulgaris53.6524.5584.95206forward
CNT30162278Manihot esculentaPistacia vera23.1818.585.3989forward
CNT3091352Manihot esculentaSolanum tuberosum43.2327.3983.73166forward
CNT30113599Manihot esculentaFicus carica70.3149.2782.96270forward

Expression of CNT30381317

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MTCFGCSSFFFSISALTALETSSSVVPKISGRVRASPTMFLEISSS*

>peptide 2 (52 aa)
GASSGGGGGGIRGRFNASPGGGGRGRTEGTPGRGGGAAGPGRPLASSLPASL*

>peptide 3 (54 aa)
MTIPYDLLWLLIFLLLNLCLNCIRNFFFSRAKDIRSSPCKSDNVSRDFIILSKSC

>peptide 4 (56 aa)
EHRQVEVVEASEEDSMLALVVEVGDELRGHQVEEEELQDQAGPWHHHYQLHFDPLQ*

Sequence

>CNT30381317
GGAGCATCGTCAGGTGGAGGTGGTGGAGGCATCCGAGGAAGATTCAATGCTAGCCCTGGTGGTGGAGGTAGGGGACGAACTGAGGGGACACCAGGTCGAG
GAGGAGGAGCTGCAGGACCAGGCAGGCCCCTGGCATCATCATTACCAGCTTCACTTTGATCCTCTCCAATAATATTTTGAGACATAGCTTGATTTGCAGT
ACGGCCAATGCTTCCACTATGACCATCCCATATGACCTGCTTTGGTTGCTCATCTTTCTTCTTCTCAATCTCTGCCTTAACTGCATTAGAAACTTCTTCT
TCAGTCGTGCCAAAGATATCAGGTCGAGTCCGTGCAAGTCCGACAATGTTTCTAGAGATTTCATCATCCTGAGCAAGAGTTGTT