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Detailed information on CNT30381273


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SI96|H2B3_ARATH, E-value = 4e-36

BLAST vs NONCODE:
NONMEST003205, E-value = 1e-89

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3072234Manihot esculentaQuercus suber41.7423.6580.54149forward
CNT30200521Manihot esculentaPisum sativum74.7945.4981.65267forward
CNT3086649Manihot esculentaVigna radiata42.5820.3882.24152forward
CNT30172842Manihot esculentaTrifolium pratense48.4631.2382.66173forward
CNT30451774Manihot esculentaSaccharum spontaneum36.9714.9784.09132forward
CNT30136307Manihot esculentaLolium perenne36.6922.0583.21131forward
CNT3013020Manihot esculentaZea mays21.2934.5588.1676forward
CNT30606042Manihot esculentaGossypium raimondii56.8666.5683.74203forward
CNT30360275Manihot esculentaLactuca sativa75.9160.6381.55271forward
CNT30114697Manihot esculentaEutrema salsugineum24.3714.1989.6687forward

Expression of CNT30381273

Peptides detected in this lncRNA

>peptide 1 (59 aa)
MSPWTSSRASFSCLRPPHHPLLVASFRPSASSPPSVPFLWERVRFRFLELTRRKQKGEI*

>peptide 2 (53 aa)
SLEVIVGFLLYLASLDASCASFSKISFIKEFIIPIALLEIPMSGWTCFKTLKM*

>peptide 3 (35 aa)
MDLLQDLEDVDLVCLRGLLHALLFLVSGRRTTLFW*

Sequence

>CNT30381273
TCTCCCTCGAAGTTATTGTTGGCTTCTTGTTGTACCTTGCTAGTCTCGACGCTTCCTGTGCAAGCTTTTCGAAAATATCGTTTATAAAGGAGTTCATAAT
TCCCATTGCCTTGCTCGAGATCCCGATGTCTGGATGGACCTGCTTCAAGACCTTGAAGATGTAGATCTTGTATGTCTCCGTGGACTTCTTCACGCGCTTC
TTTTTCTTGTCTCCGGCCGCCGCACCACCCTCTTTTGGTAGCTTCTTTCCGGCCTTCGGCTTCTTCTCCGCCTTCGGTGCCATTTCTTTGGGAGAGAGTT
AGGTTTCGATTCCTAGAACTTACAAGACGGAAACAAAAGGGAGAAATTTGAAAGCCG