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Detailed information on CNT30380944


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671810Manihot esculentaSetaria viridis5.9833.685.5483forward
CNT30535942Manihot esculentaEucalyptus grandis11.5934.5583.23161forward
CNT30277964Manihot esculentaChenopodium quinoa10.5124.3783.56146forward
CNT30628805Manihot esculentaVigna unguiculata11.5930.1584.47161forward
CNT3097013Manihot esculentaSolanum tuberosum9.5829.9584.96133forward
CNT3059890Manihot esculentaArabidopsis lyrata10.5120.3180.82146forward
CNT30135602Manihot esculentaLolium perenne10.7326.6181.88149forward

Expression of CNT30380944

Peptides detected in this lncRNA

>peptide 1 (35 aa)
NNCYVLILFQSISRNFNVQIAIRLYSCKHRSITCP*

>peptide 2 (32 aa)
MLNVIRISSGVFPFIMSATVWHVRSSRPLMFK*

>peptide 3 (39 aa)
MVPMIFWRTFYCMQPLLAGKLGKREIVIIDHCTPYPLAI*

>peptide 4 (69 aa)
MPSVILPRDVGATVHTVKLFIPHFCRIELNYVWRNPNAAAQYPAKLTFLVNHIVVAPRFTLPAKINLLV*

Sequence

>CNT30380944
GAATAACTGTTATGTTCTCATTCTATTTCAAAGTATTTCCCGAAACTTTAATGTTCAAATAGCAATTCGTCTTTACAGTTGCAAACACAGGTCAATCACA
TGTCCATAAGATAGCTACTGGTTCAGAAACTACTAAGCATACTTTAATGGTATGCTACACGCAAGCAGCTTGGTTCTCCAGCCACTGCGCTCATAGACCA
AACTCTCTTGGCTTTCCCTAATGGTGGTCGCACCTAGCGGATGGTTCCCATGATATTCTGGAGGACATTTTATTGTATGCAGCCATTACTTGCGGGCAAA
TTGGGAAAGAGAGAAATAGTCATAATTGATCACTGCACCCCGTATCCCTTGGCTATATAGTTCACAGAGTGCCTCGGTCTATTCAGATCTCAGTTTGATT
GCAGAAAATCAGACACCTAACCGAGGCAACTCGTGGCTGCCTGGCCCCAGCAGGAATTTCTAAACTACTGCTTGTAGAGGATCATTTTCTTACTTCAGTA
CTTGTAGAGGTGAGAACACTTCAGCCAGATAGCGGATGGCGTTGCTAAAAATTATAGCCTAGCCTGCTCCTCCCTAGTGGCTGTGAAAGCCAAAACACTT
CTTGAAGCTATGCTATTAGTGAACTGTAGAGGCTTTCCTGCCATTGTTCTTGAATCTTGACTCCTGATGCTTTGATCAATGCCCTCGGTCATACTTCCTC
GGGATGTTGGGGCCACAGTTCACACTGTCAAGCTTTTTATTCCTCACTTTTGTCGGATAGAGTTAAATTATGTTTGGAGGAATCCAAATGCAGCAGCACA
ATATCCGGCTAAACTAACTTTTCTAGTCAATCACATTGTAGTGGCTCCTCGCTTTACCTTACCAGCTAAGATCAATTTGCTAGTTTGATTGCCTCGCAAT
TCAAAAAAAAAAAAAACAAGAAAAGAAGAAAGCTTGCCAAGTAGCAAAGGAAATTGGCATCTGTAAAGACTGCTAAAACAGACCATATTGATAACAGTAA
GCGATCTATTGCAAGGATAGCCCATTCACTACCAATCCCTCCCCCAAGAGAACCCAACCACTATTTACGTTTATATGCGATCGCAAGTTCATAGAAGTAC
TTATAGGGTAGGTTAAAGTACCAAATATGGAATGTTTTGATGGAACATTTGTTCTAATAGTAAATAGTAAATGAACTTCGATATGGTAATAGACTTTTAA
GCCTTTAGTTTCGATTACTTCATTCAAATGCCCACTGGTTCTCACGACGAACCTCTTCCTCTTCCTCAGGGGTGAAAACATTATTGATGTTAAACGTCAT
CCGGATCTCCTCAGGGGTCTTTCCCTTTATCATGTCTGCAACAGTCTGGCATGTCAGGTCCAGCAGGCCGTTGATGTTCAAATAGTCGG