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Detailed information on CNT30380340


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30315996Manihot esculentaCorylus avellana9.6334.5184.6278forward
CNT30700162Manihot esculentaQuercus lobata10.8627.9488.6488forward
CNT3087575Manihot esculentaVigna radiata12.8434.4484.62104forward

Expression of CNT30380340

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MWSIFCPRNSTFSGNTMESVNWGVPMIPSSNLI*

>peptide 2 (64 aa)
MHLYSGRKGPAIYMLLRHYWLIVSYFNNTHLYTLLHNHIISLGNQHFHNQEEDSLNQLHSGSQE*

>peptide 3 (36 aa)
MSQMITSKMVGTTICEINSQKVTNDKEEYQILLQKS*

Sequence

>CNT30380340
TTTAACCTAAAATTTAAGTTCTATGTATGCATTTGTATTCTGGCAGGAAAGGCCCTGCGATTTACATGCTTTTGAGACACTATTGGCTTATTGTTTCGTA
TTTTAATAACACGCACTTGTATACATTATTGCATAATCACATCATATCATTGGGAAACCAGCACTTCCATAATCAAGAGGAAGATTCATTAAATCAACTT
CATTCAGGGAGTCAAGAGTGAGCTGCCGTCCTTGATGAGAACAAAAACACTGCCAGCATCACCTCTCGAGATTCGAAGCTCTTCATCAAGGTATGTGGTC
AATCTTTTGCCCTAGAAATTCCACGTTTTCTGGTAATACTATGGAGTCTGTCAACTGGGGAGTCCCAATGATCCCTTCTTCAAACTTGATCTAAACAATA
AATAGATAAATGAACATGGTCAAGCTTAGCCCTGAACACTGAAACAGATAAAAGGATAAAATCTTTATGGTTCTACCATGACAATTTCAAACCATGTCAA
CTTGAACTTTAAAAGAAGCGATTAATGAGTCAAATGATCACTTCTAAAATGGTTGGCACAACCATATGTGAAATAAATTCTCAAAAAGTTACAAATGATA
AGGAAGAATATCAAATCCTATTGCAAAAATCATAATAAAGCAATTGCTTATCCAGTGTTACCCATCTGATAGAACAAGACCAGTCTTAATTACCTCCATC
CCTGACAGATTCATTTTTCATTTAACTATGTATAACATTTGGTGAGTATTTCCAAAGTTGCAAGATACAATTAGAATGCATTATCAATATGTATTATTAA
CATAATAATG