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Detailed information on CNT30380261


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9XIH7|PLT1_ARATH, E-value = 3e-41

BLAST vs NONCODE:
NONMEST003192, E-value = 1e-67

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3043231Manihot esculentaPrunus dulcis1820.6382.95176forward
CNT30168852Manihot esculentaPistacia vera18.451.4380.56180forward
CNT30705241Manihot esculentaPrunus avium22.619.6878.73221forward
CNT30120990Manihot esculentaCitrus clementina22.2932.2580.28218forward

Expression of CNT30380261

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MFRIIGLGREDLWLLLSWLLYCSGFSSHGRTSD*

>peptide 2 (94 aa)
MSAYPTPTPATNRPTMRKEKLVANPIRRAPTKKIAPATTMVYRRPIQSEVLPAAAEPTIAAVEGVGDAVSRSVVSLAICRTFSRVVILAWSEHL*

Sequence

>CNT30380261
AAACGCCCGTGTTGATAAAAACCTGTAATTGGCAGAAAAGGTCATGCAAATTTCCTTTTTGTTTATCGTGAAATGTCATCGTAGATTATTGAAGCACAAG
TAGCGTATACGTACTTCTGGGAATGAGGTGAGGAACCCACGAGACGACGCCGGAGAGACCTCTGCAGTGTACACCGGAGCAATCATGAGTGCATATCCCA
CTCCAACTCCTGCTACGAACCGGCCAACCATGAGGAAGGAAAAGTTGGTGGCGAATCCCATTAGGAGAGCTCCGACGAAGAAAATAGCTCCAGCAACCAC
GATGGTGTACCGGCGGCCTATCCAGTCGGAGGTCCTGCCAGCTGCGGCTGAACCCACAATCGCAGCAGTTGAGGGAGTTGGAGACGCCGTTTCTAGATCT
GTGGTTTCTCTGGCTATTTGTAGGACTTTCTCGCGAGTCGTCATTTTAGCTTGGTCTGAACATCTCTGAGGATATTCATGGAGCCTCAGTCGTTTCGGCT
TCCCGATCCTTCATCATCTACAAGAGATTGAGATGGCGTTGAACTCAATTCCGCTGCCTATCGAGATCTCCAGTCACTCCCTTCCTCCTTCCCGTTTGCA
CAAATATAGAGTTCTTTAGTCGTTTTTCTGGAGCAGATCTTCCTATTTGGTAGATTGCTGTCGTGTTCTCTCAGTAATGTTCCGGATCATTGGCTTGGGC
AGAGAAGACTTGTGGTTGCTTCTAAGTTGGTTGCTTTACTGCTCGGGTTTTTCTTCTCACGGTCGGACCTCTGATTAGCCTAGGGTTTTCCTAATTTTTT
GGAAAAATTACTTTTTAGTCTCTGAGGTTTAACGTAATTAACACTTCTGTCCCTCTATTTTGACGACCCAACACATAAGTCCCTCACTTTCTCTTTCGTC
CAAATTCGTAGTCCTTTCGTCCATTTAAATCGTTTGGTCAAAGAGTCAACGGTGAGAGGTGATAATTTTTTCTAAAAA