Detailed information on CNT30379530


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONMEST003205, E-value = 3e-171

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30702570Manihot esculentaQuercus lobata46.2252.682.89263forward
CNT30526608Manihot esculentaPhaseolus vulgaris46.0532.3980.53262forward
CNT30510004Manihot esculentaSolanum lycopersicum21.2739.6782.64121forward
CNT30205622Manihot esculentaHelianthus annuus44.9994.8180.47256forward
CNT30154529Manihot esculentaPrunus persica26.7164.4183.55152forward
CNT3024639Manihot esculentaPopulus trichocarpa45.8763.3584.29261forward

Expression of CNT30379530

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MDLLQDLKDVDLIRLGTLLRPLLFLVSGRRATLFR*

Sequence

>CNT30379530
TTAAACACAATTAAGCAATTCTGCATTTTGAATCCAACCATATAAATACTCATATCAAGCAGATCCAAGCTTGGATTACAAACCCAAATATTAAATTTAA
TAATACACTAGAAATAGAAAAATATGTCATATACTACCTAAAGCCTAACACTACACACAAGAAATCCTAATTCACTAACACACCAAAGGGATCCCCTGTT
CACCGCCACCGCTTCAAGAGCTAGTAAACTTGTTCATGATACCCATTGCCTTGCTGGAAATACCGATGTCTGGATGGACCTGCTTCAAGACCTTAAAGAT
GTAGATCTTATACGTCTCGGTACTCTTCTTCGACCTCTTCTTTTTCTTGTCTCCGGCCGCCGCGCCACCCTCTTTCGGTAGCTTCTTTCCGGCCTTCGGC
TTCTTCTCCGCAGGGGCTTTCTCCGCCACCGTTTTCTTCTCTTCCGCAGGCTTCTTCTCGGCCGGCTTCTTTTCTGCCTTTGGAGCCATTCCTTACAGCT
AGAAAGTTGCGGTTAGCTTCTGGGACTCTAGAGAGAGAAAGGAAAGCGATAAGAGATATTTCTTGAAAC