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Detailed information on CNT30379403


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SI96|H2B3_ARATH, E-value = 2e-57

BLAST vs NONCODE:
NONMEST003205, E-value = 5e-173

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693619Manihot esculentaOryza sativa20.6418.3383.62116forward
CNT30675823Manihot esculentaSetaria viridis20.6426.7383.62116forward
CNT30522940Manihot esculentaSetaria italica20.6416.4883.62116forward
CNT30315505Manihot esculentaCorylus avellana28.2934.7984.28159forward
CNT30518188Manihot esculentaJuglans regia54.0934.5182.24304forward
CNT30618877Manihot esculentaSesamum indicum57.340.9181.68322forward
CNT30632073Manihot esculentaVigna unguiculata36.6527.3981.55206forward
CNT30194796Manihot esculentaPisum sativum41.9932.3781.78236forward
CNT30163367Manihot esculentaPistacia vera53.7436.2580.46302forward
CNT3094085Manihot esculentaSolanum tuberosum53.3859.4179.67300forward
CNT30179138Manihot esculentaSecale cereale20.6414.3784.48116forward
CNT30292924Manihot esculentaTriticum aestivum26.5127.6482.55149forward
CNT30220711Manihot esculentaHordeum vulgare20.6411.284.48116forward
CNT30395424Manihot esculentaTriticum turgidum20.6424.1283.62116forward
CNT30565715Manihot esculentaActinidia chinensis54.839.2483.12308forward
CNT30586986Manihot esculentaMusa acuminata46.9874.5880.3264forward
CNT30553165Manihot esculentaOryza glaberrima23.1328.2683.85130forward
CNT30443203Manihot esculentaAegilops tauschii26.5122.7182.55149forward
CNT30240867Manihot esculentaAvena sativa21.3516.9585120forward
CNT30660053Manihot esculentaTriticum dicoccoides26.5122.4782.55149forward
CNT30597299Manihot esculentaFraxinus excelsior56.2357.5683.23316forward
CNT30457159Manihot esculentaSaccharum spontaneum20.6413.9184.48116forward
CNT303693Manihot esculentaZea mays20.6433.6284.48116forward
CNT30231835Manihot esculentaAnanas comosus27.5823.8585.16155forward
CNT30129800Manihot esculentaCorymbia citriodora30.7821.4984.97173forward
CNT30681751Manihot esculentaTriticum urartu20.6418.584.48116forward
CNT30719869Manihot esculentaTriticum spelta20.6420.3284.48116forward
CNT30346527Manihot esculentaEragrostis tef19.0450.7185.05107forward
CNT30363575Manihot esculentaSorghum bicolor20.6412.5882.76116forward
CNT30619778Manihot esculentaCajanus cajan28.6524.3284.47161forward
CNT30360078Manihot esculentaLactuca sativa27.7619.785.9156forward
CNT30369782Manihot esculentaOryza glumipatula23.1320.4183.08130forward
CNT30429187Manihot esculentaPapaver somniferum32.3817.4781.32182forward
CNT30570929Manihot esculentaVitis vinifera48.7540.8383.21274forward
CNT3052765Manihot esculentaAmborella trichopoda29.3632.4884.24165forward
CNT3024557Manihot esculentaPopulus trichocarpa57.362.1684.78322forward
CNT30327286Manihot esculentaAsparagus officinalis22.2413.8388.8125forward
CNT30101075Manihot esculentaOryza rufipogon24.7319.8383.45139forward
CNT30574682Manihot esculentaOryza barthii20.6416.9684.48116forward
CNT30496069Manihot esculentaDigitaria exilis20.6414.5482.76116forward
CNT30174435Manihot esculentaVigna angularis47.3339.781.58266forward
CNT30557628Manihot esculentaPanicum hallii20.6420.8382.76116forward
CNT30724478Manihot esculentaLupinus angustifolius48.2244.9479.34271forward
CNT3065708Manihot esculentaSelaginella moellendorffii20.6433.4381.03116forward

Expression of CNT30379403

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MDLLQDLKDVDLIRLGTLLRPLLFLVSGRRATLFR*

Sequence

>CNT30379403
TAGAAATAGAAAAATATGTCATATACTACCTAAAGCCTAACACTACACACAAGAAATCCTAATTCACTAACACACCAAAGGGATCCCCTGTTCACCGCCA
CCGCTTCAAGAGCTAGTAAACTTGGTCACCGCCTTAGTCCCCTCAGACACGGCGTGCTTAGCTAACTCTCCAGGCAACACCAATCTCACAGCCGTCTGAA
TCTCCCTCGAAGTAATTGTCGGTTTCTTGTTGTACCTCGCTAGCCTCGAAGCTTCCTGTGCAAGCTTCTCGAAAATATCGTTGATAAAGGAGTTCATGAT
ACCCATTGCCTTGCTGGAAATACCGATGTCTGGATGGACCTGCTTCAAGACCTTAAAGATGTAGATCTTATACGTCTCGGTACTCTTCTTCGACCTCTTC
TTTTTCTTGTCTCCGGCCGCCGCGCCACCCTCTTTCGGTAGCTTCTTTCCGGCCTTCGGCTTCTTCTCGGCCGGCTTCTTTTCTGCCTTTGGAGCCATTC
CTTACAGCTAGAAAGTTGCGGTTAGCTTCTGGGACTCTAGAGAGAGAAAGGAAAGCGATAAG