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Detailed information on CNT30379240


BLAST search results

BLAST vs Swiss-Prot:
sp|Q40281|RCA_MALDO, E-value = 9e-26

BLAST vs NONCODE:
NONTCAT000366, E-value = 2e-36

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30727556Manihot esculentaCorchorus capsularis38.8921.6283.33168forward
CNT30144552Manihot esculentaMedicago truncatula20.8316.7685.5690forward
CNT3068390Manihot esculentaLeersia perrieri22.6918.5386.7398forward
CNT30151279Manihot esculentaBrachypodium distachyon21.316.6783.792forward
CNT30604795Manihot esculentaOryza punctata23.386.3982.18101forward
CNT30551777Manihot esculentaOryza brachyantha24.7710.5385.98107forward

Expression of CNT30379240

Peptides detected in this lncRNA

>peptide 1 (82 aa)
MFLYQWNLGWPHQEQPHSSTCQPIELSSHSLALGQASVRTQGACPGSSLVARMLGILCSLSSNCCPRKLKLGLKTQHRCHSRP

>peptide 2 (36 aa)
ETNHWFKMIENCNNHTKLEDRNPFKTRKHYRLTNPK*

Sequence

>CNT30379240
GGAAACAAACCACTGGTTTAAGATGATTGAAAATTGTAATAATCACACAAAATTAGAGGATAGAAATCCATTCAAGACAAGGAAACATTATAGGTTGACA
AATCCCAAATGAGTTTGGAAGTGATTATCCTTCCACAGATTAACATAAAAAAATCCCAATAAAAAGGGAGCTAACCGTAGAATGTTCCTCTATCAATGGA
ATCTTGGTTGGCCTCACCAAGAGCAGCCTCACTCAAGTACTTGTCAGCCAATTGAACTCTCTTCACATTCTCTTGCTCTTGGACAAGCATCTGTCCGTAC
TCAAGGAGCTTGTCCAGGTTCATCTTTGGTTGCTCGAATGTTGGGAATCTTGTGCTCACTTTCTTCAAACTGCTGCCCAAGAAAGCTGAAGTTGGGACTG
AAGACGCAGCACCGGTGCCATTCAAGGCCAGC