Detailed information on CNT30378674


BLAST search results

BLAST vs Swiss-Prot:
sp|Q04614|NU4LM_ARATH, E-value = 2e-27

BLAST vs NONCODE:
NONBNAT003706, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30618774Arabidopsis thalianaSesamum indicum22.014.6191.36463forward
CNT30170363Arabidopsis thalianaPistacia vera3.2324.3794.1268reverse complement
CNT3098426Arabidopsis thalianaSolanum tuberosum10.8827.0795.2229reverse complement
CNT30176977Arabidopsis thalianaSecale cereale5.853091.06123forward
CNT30680520Arabidopsis thalianaTriticum urartu20.7215.0791.28436forward
CNT30483535Arabidopsis thalianaChara braunii6.7525.7780.99142forward
CNT30100822Arabidopsis thalianaOryza rufipogon11.0790.3192.27233forward
CNT30578173Arabidopsis thalianaOryza barthii22.2413.7891.24468forward
CNT30115142Arabidopsis thalianaEutrema salsugineum7.7540.0599.39163reverse complement

Expression of CNT30378674

Peptides detected in this lncRNA

>peptide 1 (59 aa)
HLESLSPFFFQQLNGKWLRKGLIGCARPARKALTLPTKKKRERKEKRTSYFPYLRRGTK*

>peptide 2 (51 aa)
MRSPSEKGPDPADQEKKRTKGEENFVFSLFEKRYKVTRLKEEVRRNKGARL*

>peptide 3 (39 aa)
MLLINSTAIVPRTRKVITKMANPIADSAAATVGTNEANT*

>peptide 4 (36 aa)
MRDLVISPVPPKRRLVRNGMGNFSRCWRLRKRLKSR*

>peptide 5 (29 aa)
MRARFPRREISNEREDPPLVNFIVACIAF*

>peptide 6 (31 aa)
MITLSHEFSNARRASFSLPAAKSSENVSLHSA

>peptide 7 (33 aa)
MKQILDPSYHPKKRKIPKSSNSQLITLIQLALT*

Sequence

>CNT30378674
TCATTTAGAAAGCTTATCCCCATTTTTTTTTCAGCAACTGAACGGGAAGTGGCTTAGGAAAGGACTAATCGGATGCGCTCGCCCAGCGAGAAAGGCCCTG
ACCCTGCCGACCAAGAAAAAAAGAGAACGAAAGGAGAAGAGAACTTCGTATTTTCCTTATTTGAGAAGAGGTACAAAGTGACTCGACTGAAAGAAGAGGT
CCGAAGGAACAAAGGAGCTCGACTGTAAGGTCCACCAGGTCTCGACGAGCGACTGAAAGGAGAGGAATGGTTAACCTTGAATGCTATTAATAAATTCTAC
AGCAATAGTACCTCGGACTCGGAAAGTTATAACGAAAATGGCTAACCCAATAGCGGATTCCGCAGCTGCCACCGTTGGAACCAATGAAGCAAATACTTGA
CCCATCATATCATCCGAAGAAACGGAAAATACCAAAAAGTTCGAATTCACAGCTAATAACATTGATTCAATTGGCATTGACATAATAGGAATATTTCGTC
TATTAAGGAGGATTCCCCGAATACCTAAAATAGAAATAATCATAGAAAATGTGAAATATTTGATAAGATCCATTTCGGGAACGTGGAATCTAAGATAAAT
TCAAATGTTATTAGATGACAAGCTCGACCGAACACCTGAAGTCCTTGATATTTAGGTTAGGGAGACACGCGCGCATTCCTGACAACAGGCACGGGCGATA
ATCCAGGCAAGCTTCCCCGCAAGCCTCACAACAGACACGTCCCAGCTGTCCGACCGTAGGCCCCGCTGCTGCGGCAAGGCGCGGCAGCCCTCTGACCCTG
CGAAAAAGAGCTTCCCGTCGGTTCAGGCACCATTTTTTTGAATAGGTGGGACTTCGGTGATAGGTTGTTTTTGATCCCATGAGGGATCTAGTGATTTCCC
CCGTTCCCCCCAAGAGGAGATTGGTTAGGAACGGGATGGGCAACTTCAGCCGGTGCTGGCGCCTGCGTAAGCGGCTCAAGAGCCGCTAAAGAGAACCAAT
AGACACGACAGCTGGGCCAGCACCAGAAGTGGATTTACTAAATCCCCCTTATCTATTTCTGGGTAAATAAGTTGGTGACTAACAACAAAGACAAAAAAAC
TTGCTACCAAGAAGACGATGGATAAGAGAAAAATTAGGGTATTTTCTCCTTCCGGTTTGACTTTAGAAAAAAAAAAGGAATAATTTACACCGACTAAGAT
CAAAGAAACTAGCAGACTAATCACTAAAAAGGCCTTTGGTTCAAATTGTTACATCTATCTTAACTTACTCAATTATCTCGTGAACTATCTGCTTCAAAAA
GAGAGTTGGTTGAATGAGACTGAAACCTTCTTTCTTCGAGGAGGGCACCACTTCGACTGATGCGGGCGCGGTTCCCTCGTCGTGAAATAAGTAATGAAAG
GGAAGACCCGCCCCTGGTCAACTTTATTGTTGCCTGTATAGCTTTTTAGAACAGAGATCTAGCAACGCATTCTAGGCACCTTTGGAAGGCAGGGAGTGTG
ACAACGTACACGCTTCCCTTTACTCCATAGGGCCTTCTTTCTCATCAGTTGCAGGGTTTGGTGGCCCGAAAGAAACTTGGCTTCGCCAAAAGGCCTCATC
TCTGGAAGCCCGGCTCGCGAGGCGTCCCTCCCGCTGTAGGGTTCCAAAACTCGCCTCGCTCTTGGGACATGCTATCTTTCCCCTCTTTATTCTCAAGTAA
AGGGTGAGTCCCATGCGTCAGTTTGTGGATCGCGGTCTCACGCACTAATCCCTACAGGCGGGTGCCCGTAGTAGGCCGGCCGCCCTACCTAAACCAATCA
TCATATCGGTCCCTAAGCCCCATTGCTGGAAAGGCTCGGCTTCAAAACCGTACGTGGGGCTTCCGCCTCATACGGCTCCTCTAAGGATGGAGGTAGGCCC
AGCCCAGGCTTGCGCGGTTAAGGTTGTTGTACACCTGCCAATCAAGTAAAAAAAAAGAAGAGAACGAAAGCTTTAGTTTTGGGGGGGTTGGTTATTCCGT
GTATGGATGATCACCTTGAGCCACGAATTTAGTAATGCAAGGCGGGCTTCTTTCTCCCTTCCCGCCGCTAAATCCTCCGAAAACGTCTCCCTCCATTCGG
CTAT